View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5905_high_30 (Length: 248)
Name: NF5905_high_30
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5905_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 16643635 - 16643872
Alignment:
| Q |
1 |
tatgttgcctaatttgtcattgaaccaataaacaaaaacgaaaaccacattcacaatcatttagcaacaaatgcaagaaaatataatcctaattcgtatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
16643635 |
tatgttgcctaatttgtcattgaaccaataaacataaacgaaaaccacattcacaatcatttagcaacaaatgcaagaaaatataattttaattcgtatt |
16643734 |
T |
|
| Q |
101 |
aataaagcatgctagccatgtatgtgtacaaggttcttggaaaatttaagtgcacaaggcaaaagtaataccttttgagtctcttcaaaggtaaccatcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16643735 |
aataaagcatgctagccatgtatgtgtacaaggttcttggaaaatttaagtgcacaaggcaaaagtaataccttttgagtctcttcaaaggtaaccatcc |
16643834 |
T |
|
| Q |
201 |
aaatcaccattacgcagaaaaataataatcgtaatatt |
238 |
Q |
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|||| ||||| ||||||||| ||||||||||||||||| |
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| T |
16643835 |
aaattaccatcacgcagaaatataataatcgtaatatt |
16643872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 17617996 - 17618233
Alignment:
| Q |
1 |
tatgttgcctaatttgtcattgaaccaataaacaaaaacgaaaaccacattcacaatcatttagcaacaaatgcaagaaaatataatcctaattcgtatt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
17617996 |
tatgttgcctaatttgtcattgaaccaataaacataaacgaaaaccacattcacaatcatttagcaacaaatgcaagaaaatataattttaattcgtatt |
17618095 |
T |
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| Q |
101 |
aataaagcatgctagccatgtatgtgtacaaggttcttggaaaatttaagtgcacaaggcaaaagtaataccttttgagtctcttcaaaggtaaccatcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17618096 |
aataaagcatgctagccatgtatgtgtacaaggttcttggaaaatttaagtgcacaaggcaaaagtaataccttttgagtctcttcaaaggtaaccatcc |
17618195 |
T |
|
| Q |
201 |
aaatcaccattacgcagaaaaataataatcgtaatatt |
238 |
Q |
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|||| ||||| ||||||||| ||||||||||||||||| |
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| T |
17618196 |
aaattaccatcacgcagaaatataataatcgtaatatt |
17618233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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