View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5905_high_36 (Length: 220)
Name: NF5905_high_36
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5905_high_36 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 2617545 - 2617361
Alignment:
| Q |
19 |
gttcaagatacttatcagtgataatctattttacgaaactatagccaacaacatgatgtaaagctattaggtaataaataaatgccatgataatagtaaa |
118 |
Q |
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| T |
2617545 |
gttcaagatacttatcagtgataatctattttacgaaactatagccaacaacatgatgtaaagctattaggtaataaataaatgccatgataatagtaaa |
2617446 |
T |
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| Q |
119 |
tgagcaaggaaagttgcaggtttacaatggaaaagccataaaagtatacatccaaaagaacaaggaatcgatgttgatttcatga |
203 |
Q |
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| T |
2617445 |
tgagcaaggaaagttgcaggtttacaatggaaaagccataacagtatacatccaaaagaacaaggaatcgatgttgatttcatga |
2617361 |
T |
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Target: chr7 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 27 - 203
Target Start/End: Original strand, 10351319 - 10351494
Alignment:
| Q |
27 |
tacttatcagtgataatctattttacgaaactatagccaacaacatgatgtaaagctattaggtaataaataaatgccatgataatagtaaatgagcaag |
126 |
Q |
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| T |
10351319 |
tacttatcaatgataatctattgtaagaaactatagccaacaacatgaagtaatgctattacatataaaataaaggtcacgataataacaaatgagcaag |
10351418 |
T |
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| Q |
127 |
gaaagttgcaggtttacaatggaaaagccataaaagtatacatccaaaagaacaaggaatcgatgttgatttcatga |
203 |
Q |
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| T |
10351419 |
aaaagttgcagg-ttacagtgaaaaagccataaaagtatacattcaaaagaacaaggaatcgatgttgatttcatga |
10351494 |
T |
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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 34466409 - 34466502
Alignment:
| Q |
109 |
taatagtaaatgagcaaggaaagttgcaggtttacaatggaaaagccataaaagtatacatccaaaagaacaaggaatcgatgttgatttcatga |
203 |
Q |
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| T |
34466409 |
taataataaatgagcaagggaagttgcaggttaa-agtggaaaagccataaaaatatacatccaaaagaacaaggaatcgacgttgatttcatga |
34466502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 34466024 - 34466095
Alignment:
| Q |
20 |
ttcaagatacttatcagtgataatctattttacgaaactatagccaacaacatgatgtaaagctattaggta |
91 |
Q |
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| T |
34466024 |
ttcaagatacttattagtgataatctattttatgaaactatagccaacaacatgaaataaagctattaggta |
34466095 |
T |
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