View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5905_high_38 (Length: 207)
Name: NF5905_high_38
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5905_high_38 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 2e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 33 - 174
Target Start/End: Original strand, 1393085 - 1393226
Alignment:
| Q |
33 |
accaaagccgtttacaaataaacatcatgtataaatacaagaataagctaaaatagtgttcatttaaccaactgtgttaaaaatgggatagtggtaccta |
132 |
Q |
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| T |
1393085 |
accaaagccgtttacaaataaacatcatgtataaatacaagaataagctaaaatagtgttcatttaactaactgtgttaaaaatgggatagtggtaccta |
1393184 |
T |
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| Q |
133 |
caccgcatctctatcattttaattccgttttatcttgttaac |
174 |
Q |
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| T |
1393185 |
caccgcatctctatcattttaattccgttttatcttgttaac |
1393226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 1396821 - 1396769
Alignment:
| Q |
33 |
accaaagccgtttacaaataaacatcatgtataaatacaagaataagctaaaa |
85 |
Q |
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|||||||| |||||||||||||||| |||||| |||| ||||||||||||||| |
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| T |
1396821 |
accaaagctgtttacaaataaacatgatgtatcaataaaagaataagctaaaa |
1396769 |
T |
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