View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5905_high_39 (Length: 206)

Name: NF5905_high_39
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5905_high_39
NF5905_high_39
[»] chr6 (26 HSPs)
chr6 (25-206)||(5398179-5398360)
chr6 (48-206)||(5156017-5156175)
chr6 (48-206)||(5100822-5100980)
chr6 (48-206)||(5372230-5372388)
chr6 (44-205)||(5177873-5178034)
chr6 (44-205)||(5279698-5279859)
chr6 (44-205)||(5688903-5689064)
chr6 (48-206)||(5135923-5136081)
chr6 (44-206)||(2939044-2939210)
chr6 (44-206)||(5098344-5098506)
chr6 (44-202)||(5180774-5180932)
chr6 (44-206)||(5351533-5351695)
chr6 (44-206)||(5242512-5242674)
chr6 (44-204)||(5065449-5065609)
chr6 (44-206)||(5439144-5439306)
chr6 (44-206)||(5427033-5427195)
chr6 (44-202)||(23127310-23127468)
chr6 (44-206)||(5126629-5126791)
chr6 (44-202)||(5346166-5346324)
chr6 (44-202)||(5352863-5353021)
chr6 (44-202)||(5448746-5448904)
chr6 (54-205)||(5072692-5072843)
chr6 (67-206)||(5334311-5334457)
chr6 (44-146)||(5283224-5283326)
chr6 (44-146)||(5256114-5256216)
chr6 (44-202)||(5124443-5124601)
[»] chr3 (4 HSPs)
chr3 (44-205)||(47985393-47985554)
chr3 (44-205)||(48003967-48004128)
chr3 (44-205)||(47994680-47994841)
chr3 (44-205)||(48013252-48013413)
[»] chr7 (1 HSPs)
chr7 (65-202)||(36212942-36213079)
[»] chr4 (3 HSPs)
chr4 (89-204)||(25568975-25569090)
chr4 (44-202)||(4132618-4132773)
chr4 (152-204)||(4319410-4319462)


Alignment Details
Target: chr6 (Bit Score: 114; Significance: 5e-58; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 25 - 206
Target Start/End: Complemental strand, 5398360 - 5398179
Alignment:
Q  25 tacaagcaattgcattcaaatcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccagg 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||   |||||| ||||||||||||||    
T  5398360 tacaagcaattgcattcaaatcatatacaagataaactgttgtcttcttcacaatgaaatcattctcgaaaacaaagacaacctcaactttgttaccagg 5398261  T
Q  125 ttttagacttgatactaccctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggcc 206  Q
    || || |||||||||||||||  |  |||| |||| ||||||||||| ||| ||||||||||||||||||||||||||||||    
T  5398260 ttctatacttgatactaccctttgcccctcttcatgttcaaaggagaataacgcctcactcttatagagctgaatggtggcc 5398179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 48 - 206
Target Start/End: Original strand, 5156017 - 5156175
Alignment:
Q  48 tatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactaccctca 147  Q
    ||||||||||||||||||||||||||||||| |||||   |||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||     
T  5156017 tatacaagataaactgttgtcttcttcacaatgaaattaatctcgaaaacaaaatggacctccactttgttaccaggttctagacttgatactaccctct 5156116  T
Q  148 gagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggcc 206  Q
    |  |||| ||||||||||||||| | ||||||||||||||||| |||||||||||||||    
T  5156117 gcccctcttcatcttcaaaggaggccaatgcctcactcttataaagctgaatggtggcc 5156175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 48 - 206
Target Start/End: Original strand, 5100822 - 5100980
Alignment:
Q  48 tatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactaccctca 147  Q
    ||||| |||||||||| |||||| ||||||| ||||   ||||||||||||| |   ||||||||||||||||| |||| || |||||||||||||||||    
T  5100822 tatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgatactaccctca 5100921  T
Q  148 gagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggcc 206  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5100922 gagcctcctcatcttcaaaggagactaatgcctcgctcttatagagctgaatggtggcc 5100980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 48 - 206
Target Start/End: Complemental strand, 5372388 - 5372230
Alignment:
Q  48 tatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactaccctca 147  Q
    ||||| ||||||| ||||||||||||||||| |||||| ||||| | ||||||||| | |||||||||||||||||||| |||||||||||||||||||     
T  5372388 tatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggatctccactttgttaccaggttctagacttgatactaccctct 5372289  T
Q  148 gagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggcc 206  Q
    |  |||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  5372288 gcccctcttcatcttcaaaggagactaatgcttcactcttataaagctgaatggtggcc 5372230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 44 - 205
Target Start/End: Complemental strand, 5178034 - 5177873
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||| |||||||||||||| |||||||||| |||| | ||||||||||||| |  ||||||||||||||||| ||||| || ||||||||||||     
T  5178034 atcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactact 5177935  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggc 205  Q
    ||| || |||| ||||||||||||||| |||||||||| |||||||| ||||||||||||||    
T  5177934 ctctgaccctcttcatcttcaaaggaggctaatgcctctctcttataaagctgaatggtggc 5177873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 44 - 205
Target Start/End: Complemental strand, 5279859 - 5279698
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||| |||||||||||||| |||||||||| |||| | ||||||||||||| |  ||||||||||||||||| ||||| || ||||||||||||     
T  5279859 atcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactact 5279760  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggc 205  Q
    ||| || |||| ||||||||||||||| |||||||||| |||||||| ||||||||||||||    
T  5279759 ctctgaccctcttcatcttcaaaggaggctaatgcctctctcttataaagctgaatggtggc 5279698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 44 - 205
Target Start/End: Original strand, 5688903 - 5689064
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||| |||||||||||||| |||||||||| |||| | |||||||||||| ||  ||||||||||||||||| ||||| || ||||||||||||     
T  5688903 atcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 5689002  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggc 205  Q
    ||| |  |||| |||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  5689003 ctctgtccctcttcatcttcaaaggagactaatgcctcgctcttataaagctgaatggtggc 5689064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 48 - 206
Target Start/End: Original strand, 5135923 - 5136081
Alignment:
Q  48 tatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactaccctca 147  Q
    ||||| |||||||||| |||||| ||||||| ||||   ||||||||||||| |   ||||||||||||||||| |||| || |||||||||||||||||    
T  5135923 tatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgatactaccctca 5136022  T
Q  148 gagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggcc 206  Q
    ||||||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||    
T  5136023 gagcctcctcatcttcaaaggaggctaatgcttcgctcttgtagagctgaatggtggcc 5136081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 44 - 206
Target Start/End: Complemental strand, 2939210 - 2939044
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||| ||||||| ||||| ||||||||||| | |||| ||||| | ||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  2939210 atcatatacgagataaattgttgccttcttcacaatgcaatcattctcgataacaaaatggacctccactttgttaccaggttatagacttgatactacc 2939111  T
Q  144 ctcagagcctcct----catcttcaaaggagactaatgcctcactcttatagagctgaatggtggcc 206  Q
    ||| |  | || |    ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2939110 ctctgcccttcttcatccatcttcgaaggagactaatgcctcactcttatagagctgaatggtggcc 2939044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 44 - 206
Target Start/End: Complemental strand, 5098506 - 5098344
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaa-aatgaacctccactttgttaccaggttttagacttgatactac 142  Q
    ||||||||| |||||||||| |||||| ||||||| ||||   ||||| ||||||| ||||| ||||||||||||||||||||| || |||||||| |||    
T  5098506 atcatataccagataaactgctgtctttttcacaatgaaactgttctcgaaaacaacaatga-cctccactttgttaccaggttctatacttgatattac 5098408  T
Q  143 cctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggcc 206  Q
    |||| |   ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5098407 cctctggctctcctcatcttcaaaggagaccaatgcctcactcttatagagctgaatggtggcc 5098344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 5180774 - 5180932
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||| ||||||| || |||||||||||||| ||||  ||||||||||||||||   ||||||||||||||||| |||| ||  ||||||||||||    
T  5180774 atcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactacc 5180873  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggt 202  Q
    ||| || |||| ||||||||||| |||||||| |  |||||||||||||||||||||||    
T  5180874 ctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatggt 5180932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 44 - 206
Target Start/End: Complemental strand, 5351695 - 5351533
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||| |||||||||  |||||| ||||||| | |||| ||||| |||||||||   ||||||||||||||||  |||| || ||||||||||| |    
T  5351695 atcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaatgacctccactttgttactgggttctatacttgatactaac 5351596  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggcc 206  Q
    ||| |  ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  5351595 ctctgcccctcctcatcttcaaaggaaactaatgcctcactcttatagagccgaatggtggcc 5351533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 206
Target Start/End: Original strand, 5242512 - 5242674
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||| |||||||||  |||||||||||||| ||||   |||||||||||||||   |||||||||||||||||||||| || |||| |||||||     
T  5242512 atcatatacgagataaactactgtcttcttcacaatgaaactgttctcaaaaacaaaaacgacctccactttgttaccaggttctatacttcatactact 5242611  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggcc 206  Q
    |||||  ||| |||||||||||||| | ||| |||||| ||||| ||||||||||||||||||    
T  5242612 ctcagccccttctcatcttcaaaggcggctactgcctctctcttgtagagctgaatggtggcc 5242674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 204
Target Start/End: Original strand, 5065449 - 5065609
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||  ||||||||||||||| |||||||||||||| | ||||||||||||| |  ||  |||||||| || |||||||  | ||||||||||||     
T  5065449 atcatatatgagataaactgttgtcctcttcacaacgaaaccgttctcaaaaacaacaacaaaatccactttatttccaggttcaatacttgatactact 5065548  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtgg 204  Q
    ||| |  ||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||    
T  5065549 ctctgcccctcctcatcttcaaaggagattaacgcctctctcttatagagctgaatggtgg 5065609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 44 - 206
Target Start/End: Complemental strand, 5439306 - 5439144
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||| |||||| ||| |||||| ||  ||| |||||| ||||  |||||||||  ||||||||||||||||||||||| || |||||||  || |    
T  5439306 atcatatacgagataagctgctgtctttttggcaatgaaatcattcttgaaaacaaaaacaacctccactttgttaccaggttctatacttgattttaac 5439207  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggcc 206  Q
    ||| |  |||||||||||||||| |||||||  ||||||||||||||||||||||||||||||    
T  5439206 ctctgcccctcctcatcttcaaaagagactacagcctcactcttatagagctgaatggtggcc 5439144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 44 - 206
Target Start/End: Complemental strand, 5427195 - 5427033
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||| |||||||||  ||||||| |||||||||||   |||||||||||||||   ||||||| |||||||||||||| || ||||||||||||     
T  5427195 atcatatacgagataaactactgtcttcgtcacaacgaaactgttctcaaaaacaaaaacgacctccattttgttaccaggttctatacttgatactact 5427096  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggcc 206  Q
    ||     |||||||||||||||| || |||||| ||||||||||||| ||||||||| |||||    
T  5427095 ctttccccctcctcatcttcaaatgacactaatacctcactcttataaagctgaatgatggcc 5427033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 23127310 - 23127468
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    |||||||||||||||||||||||| ||||||||||||||| | ||||||||||| | |  |||||||| |||||||||||||| |  |||||||||||      
T  23127310 atcatatacaagataaactgttgtattcttcacaacgaaaccattctcaaaaacgacaacaacctccattttgttaccaggttctgcacttgatactaag 23127409  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggt 202  Q
    |||    | ||||||||||| || |||||||||| ||| |||||||||| |||||||||    
T  23127410 ctcttcccttcctcatcttcgaacgagactaatgtctctctcttatagatctgaatggt 23127468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 44 - 206
Target Start/End: Original strand, 5126629 - 5126791
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||  |||||||| | |||||||||||||| |||| | |||| |||||||| |  || ||| ||||||||||||| || || ||||||||||||     
T  5126629 atcatatatgagataaacagctgtcttcttcacaatgaaaccgttcttaaaaacaacaacaatctcaactttgttaccagcttctatacttgatactact 5126728  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggcc 206  Q
    |||    |||||||||||||||||||||||  |||||| ||||||||||| ||||||||||||    
T  5126729 ctctccccctcctcatcttcaaaggagactgctgcctctctcttatagagttgaatggtggcc 5126791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 5346324 - 5346166
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||  ||||||| || |||||||||||||| |||| | ||||||| |||||    ||||||||||||||||||||||| || ||||||||| ||     
T  5346324 atcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgatacaact 5346225  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggt 202  Q
    ||| |  |||||||||||||||||| | ||| |||||| ||||| || |||||||||||    
T  5346224 ctctggccctcctcatcttcaaaggcggctactgcctctctcttgtatagctgaatggt 5346166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 5352863 - 5353021
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||| ||||||| ||||||||||||||| | ||||   ||||| ||||||| |   ||||| ||||||| |||||| |  | ||||||||||||     
T  5352863 atcatataccagataaattgttgtcttcttcacgatgaaacaattctcgaaaacaataaccacctctactttgtcaccaggatccatacttgatactact 5352962  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggt 202  Q
    ||| |  ||||||||||||||||||| | ||||||||| |||||||| |||||||||||    
T  5352963 ctctgcccctcctcatcttcaaaggaaattaatgcctctctcttataaagctgaatggt 5353021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 5448904 - 5448746
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||| ||||| |||  |||||||| ||||  |||||| ||||| |||||||||   | |||||||||||| || |||| || ||||||||||| |    
T  5448904 atcatataccagatatactactgtcttctccacagtgaaatcattctcgaaaacaaaaacgatctccactttgtttccgggttctatacttgatactaac 5448805  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggt 202  Q
    ||| |  |||||| |||||||||||| ||||||| ||||||||||||||  ||||||||    
T  5448804 ctctgcccctccttatcttcaaaggaaactaatgtctcactcttatagatttgaatggt 5448746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 205
Target Start/End: Original strand, 5072692 - 5072843
Alignment:
Q  54 agataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactaccctcagagcct 153  Q
    ||||||| | ||||||| ||||||| |||||| ||||||| |||||    ||||||||||| ||||||||| | || |||||||||||  |||    |||    
T  5072692 agataaattattgtctttttcacaatgaaatcgttctcaacaacaacgacaacctccacttggttaccaggctctatacttgatactaatctctcgccct 5072791  T
Q  154 cctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggc 205  Q
    | |||||||  ||||||||||||||||| |||||||| || |||||||||||    
T  5072792 catcatctttgaaggagactaatgcctctctcttatatagttgaatggtggc 5072843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 67 - 206
Target Start/End: Complemental strand, 5334457 - 5334311
Alignment:
Q  67 tcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactaccctcagagcctcctcatcttcaa- 165  Q
    ||||||||| || |||||| ||||| |||||||||   |||||||||||||||||||||| ||||| |||||||||||||    |||| |||||||  |     
T  5334457 tcttcttcaaaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaa 5334358  T
Q  166 ------aggagactaatgcctcactcttatagagctgaatggtggcc 206  Q
          || || |||||||||||||||||||||| ||||||||||||    
T  5334357 gaagttagaagtctaatgcctcactcttatagagttgaatggtggcc 5334311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 146
Target Start/End: Original strand, 5283224 - 5283326
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaa-atgaacctccactttgttaccaggttttagacttgatactac 142  Q
    ||||||||| ||||||| || |||||||||||||| ||||   || ||||||||||| ||| ||||||||||||||||| ||||  | |||||||| |||    
T  5283224 atcatataccagataaattgctgtcttcttcacaatgaaactgttttcaaaaacaaatatg-acctccactttgttacctggttcgatacttgatattac 5283322  T
Q  143 cctc 146  Q
    ||||    
T  5283323 cctc 5283326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 44 - 146
Target Start/End: Original strand, 5256114 - 5256216
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||| | ||||| || |||||||||||||| |||||| ||||  ||||||||    ||||||||||||||||| ||||  | |||||||| ||||    
T  5256114 atcatataccaaataaattgctgtcttcttcacaatgaaatcattcttgaaaacaaatacgacctccactttgttacctggttcaatacttgatattacc 5256213  T
Q  144 ctc 146  Q
    |||    
T  5256214 ctc 5256216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 5124443 - 5124601
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    |||||||| || ||| | |||||||| |||||||| |||    |||| ||||||||||  ||  |||||||| |||||||||| || ||| |||||||      
T  5124443 atcatatataatatacattgttgtctccttcacaatgaagcggttcttaaaaacaaaaacaaattccactttattaccaggttctatactcgatactaat 5124542  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggt 202  Q
    ||  |  ||||||| |||| ||| | ||||||||| || ||||||||||| ||||||||    
T  5124543 ctatgcccctcctcctcttgaaatgcgactaatgcatctctcttatagagttgaatggt 5124601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 9e-32; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 44 - 205
Target Start/End: Original strand, 47985393 - 47985554
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    |||||||||||||||||||| | || ||||||||| |||| | ||||||||||||| |   ||||||||||||||||| |||| || ||||||||||||     
T  47985393 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact 47985492  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggc 205  Q
    |||    ||||||||||| ||||||||| ||||| ||||||||||||||| |||||| ||||    
T  47985493 ctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaatgatggc 47985554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 44 - 205
Target Start/End: Original strand, 48003967 - 48004128
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    |||||||||||||||||||| | || ||||||||| |||| | ||||||||||||| |   ||||||||||||||||| |||| || ||||||||||||     
T  48003967 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact 48004066  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggc 205  Q
    |||    ||||||||||| ||||||||| ||||| ||||||||||||||| |||||| ||||    
T  48004067 ctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaatgatggc 48004128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 44 - 205
Target Start/End: Original strand, 47994680 - 47994841
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    |||||||||||||||||||| | || ||||||||| |||| | ||||||||||||| |   ||||||||||||||||| | || || ||||||||||||     
T  47994680 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact 47994779  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggc 205  Q
    |||    ||||||||||| ||||||||| ||||| ||||||||||||||| |||||| ||||    
T  47994780 ctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaatgatggc 47994841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 44 - 205
Target Start/End: Original strand, 48013252 - 48013413
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    |||||||||||||||||||| | || ||||||||| |||| | ||||||||||||| |   ||||||||||||||||| | || || ||||||||||||     
T  48013252 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact 48013351  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggc 205  Q
    |||    ||||||||||| ||||||||| ||||| ||||||||||||||| |||||| ||||    
T  48013352 ctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaatgatggc 48013413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 65 - 202
Target Start/End: Original strand, 36212942 - 36213079
Alignment:
Q  65 tgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactaccctcagagcctcctcatcttca 164  Q
    |||||||||||||| |||||  ||||||||||||| |  |||||||| ||| | |||||||| || |||||||||||  ||| |  ||||||||||||||    
T  36212942 tgtcttcttcacaatgaaattgttctcaaaaacaacaacaacctccattttatcaccaggttctatacttgatactaatctctgcccctcctcatcttca 36213041  T
Q  165 aaggagactaatgcctcactcttatagagctgaatggt 202  Q
    || |||||||||||||| |||||||||| |||||||||    
T  36213042 aatgagactaatgcctctctcttatagatctgaatggt 36213079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 25569090 - 25568975
Alignment:
Q  89 ctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactaccctcagagcctcctcatcttcaaaggagactaatgcctcactctta 188  Q
    |||||||||||||  ||||||||||||||| ||||||| || ||||||||||||  |  |  ||||||| | ||||||||| ||||||||||| |||||     
T  25569090 ctcaaaaacaaaaacaacctccactttgtttccaggttctatacttgatactactatatgcccctcctcgttttcaaaggaaactaatgcctctctcttg 25568991  T
Q  189 tagagctgaatggtgg 204  Q
    |||| |||||||||||    
T  25568990 tagacctgaatggtgg 25568975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 4132618 - 4132773
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||  |||||||||| ||||||| |||||| ||||   ||| ||||||||| |   | ||| ||||||| ||||||||  | | ||||||||||     
T  4132618 atcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaacaaca---atctcgactttgtcaccaggttccatatttgatactact 4132714  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggt 202  Q
    ||| |   |||||||| |||||||||| | |||||||| ||||||||||||||||||||    
T  4132715 ctctgccactcctcattttcaaaggaggcgaatgcctctctcttatagagctgaatggt 4132773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 4319410 - 4319462
Alignment:
Q  152 ctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtgg 204  Q
    |||||||| ||||||||||  |||||| || ||||||||||| ||||||||||    
T  4319410 ctcctcattttcaaaggaggataatgcttctctcttatagagttgaatggtgg 4319462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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