View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5905_high_6 (Length: 551)
Name: NF5905_high_6
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5905_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 40883265 - 40883035
Alignment:
| Q |
17 |
aatctgatcaaaagtaaccacctatccctcacgatgtaagcctctttttcacttcgctttcgttcttctactctgtctgcatagagacagaagttaaaag |
116 |
Q |
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| T |
40883265 |
aatctgatcaaaagtaaccacctatccctcacgatgtaaacctctttttcacttcgcttttgttcttctactctgtctgcatagagacagaagttaaaag |
40883166 |
T |
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| Q |
117 |
gtagaatgaagaaggaccgactccgagtagtatgtgtctttgacgacaatgatatttgtcttacacagtgaaagcaagacgctgcgacattgcccatcgt |
216 |
Q |
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|||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| | |
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| T |
40883165 |
gtagaatgaagaaggaccgattctgagtagtatttgtctttgacgacaatgatatttgtcttacgcggtgaaagcaagacgctgcgacattgcccatcat |
40883066 |
T |
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| Q |
217 |
ggcagaggaatttatggggcacaaaccttga |
247 |
Q |
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| T |
40883065 |
ggcagaggaatttatggggcacaacccttga |
40883035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 313 - 458
Target Start/End: Complemental strand, 40882969 - 40882824
Alignment:
| Q |
313 |
atttgacggattgtgttttctacttttgtttggatgcatgaaccataattaaatgaagaattagtagaaatttagcatagtcgtattgaaaaagatgtgt |
412 |
Q |
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| T |
40882969 |
atttgacagattgtgttttgtacttttgtttggatgcatgaaccataattaaatgaagatttagtagaaatttagcatagtcgtagtgaaaaagatgtgt |
40882870 |
T |
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| Q |
413 |
tggaagatataaggttagagattatatagttcatcacatggagatt |
458 |
Q |
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| T |
40882869 |
tggaagatataaggtcagagattaaatagttcatcgcatagagatt |
40882824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 494 - 551
Target Start/End: Complemental strand, 40882788 - 40882731
Alignment:
| Q |
494 |
gtattaatgattttgatgtctgttctactttaccatgactatctttctcttcttttct |
551 |
Q |
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| T |
40882788 |
gtattaaggaatttgatgtctgttctactctaccatgactatttgtctcttcttttct |
40882731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 8908739 - 8908967
Alignment:
| Q |
17 |
aatctgatcaaaagtaaccacctatccctcacgatgtaagcctctttttcacttcgctttcgttcttctactctgtctgcatagagacagaagttaaaag |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8908739 |
aatctgatcaaaagtaaccacctatccctcacgatgtaaacctctttttcacttcgcttttgttcttctactctgtctgcatagagacagaagttaaaa- |
8908837 |
T |
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| Q |
117 |
gtagaatgaagaaggaccgactccgagtagtatgtgtctttgacgacaatgatatttgtcttacacagtgaaagcaagacgctgcgacattgcccatcgt |
216 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||| |
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| T |
8908838 |
gtagaatgaagaaggaccgactccgagtagtatttgtctttgacgacaatgatatttgtcttacacggtgaaagcaagacactgtgacattgcccatcgt |
8908937 |
T |
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| Q |
217 |
ggcagaggaatttatggggcacaaaccttga |
247 |
Q |
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| T |
8908938 |
ggcaga-gaatttatggggcacaacccttga |
8908967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 313 - 458
Target Start/End: Original strand, 8909033 - 8909178
Alignment:
| Q |
313 |
atttgacggattgtgttttctacttttgtttggatgcatgaaccataattaaatgaagaattagtagaaatttagcatagtcgtattgaaaaagatgtgt |
412 |
Q |
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||||||| ||||||||||| ||||||||||| ||||| | ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
8909033 |
atttgacagattgtgttttgtacttttgtttcgatgctttaaccataattaaatgaagatttagtagaaatttagcatagtcgtagtgaaaaagatgtgt |
8909132 |
T |
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| Q |
413 |
tggaagatataaggttagagattatatagttcatcacatggagatt |
458 |
Q |
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| T |
8909133 |
tggaagatataaggtcagagattatatagttcatcacatagagatt |
8909178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 8891256 - 8891308
Alignment:
| Q |
17 |
aatctgatcaaaagtaaccacctatccctcacgatgtaagcctctttttcact |
69 |
Q |
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| T |
8891256 |
aatctgatcaaaagtaaccacctatccctcacgatgtaaacctctttttcact |
8891308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 494 - 549
Target Start/End: Original strand, 8909214 - 8909269
Alignment:
| Q |
494 |
gtattaatgattttgatgtctgttctactttaccatgactatctttctcttctttt |
549 |
Q |
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| T |
8909214 |
gtattaaggattttgatgtctgatctactttaccatgactatttgtctcttctttt |
8909269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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