View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5905_low_1 (Length: 837)

Name: NF5905_low_1
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5905_low_1
NF5905_low_1
[»] chr1 (2 HSPs)
chr1 (18-820)||(3151666-3152470)
chr1 (287-404)||(15381066-15381183)
[»] chr7 (9 HSPs)
chr7 (250-412)||(21200350-21200512)
chr7 (292-400)||(24284912-24285020)
chr7 (250-412)||(21195104-21195266)
chr7 (251-405)||(24238910-24239064)
chr7 (731-820)||(24231336-24231425)
chr7 (309-404)||(24158638-24158733)
chr7 (270-396)||(24231720-24231846)
chr7 (357-412)||(24121200-24121255)
chr7 (76-131)||(24231981-24232036)
[»] chr2 (1 HSPs)
chr2 (250-400)||(10989588-10989740)


Alignment Details
Target: chr1 (Bit Score: 730; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 730; E-Value: 0
Query Start/End: Original strand, 18 - 820
Target Start/End: Original strand, 3151666 - 3152470
Alignment:
Q  18 tataatctgtgattttgnnnnnnnnccttgtcatttgatgtttcatctcttgcttttgtaggtagttgatcttctcaaattatcattgttctcaaactcc 117  Q
    |||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3151666 tataatctgtgattttgttttttttccttgtcatttgatgtttcatctcttgcttttgtaggtagttgatcttctcaaattatcattgttctcaaactcc 3151765  T
Q  118 cctttgacagatttaatcttaaagaagaatcaatttgttgataaattttaccaaagcaatcaaaaaatttgaatttggaaatggagagaaaccatctgaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3151766 cctttgacagatttaatcttaaagaagaatcaatttgttgataaattttaccaaagcaatcaaaaaatttgaatttggaaatggagagaaaccatctgaa 3151865  T
Q  218 aggggtaggtatatggttgtgaaactaatagtaagaaaatcaactagagagtttctatttgctgaagcacaagaagattttattgacattgttttcagtt 317  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||    
T  3151866 aggggtaggtatatggttgtgaaactaatggtaagaaaatcaactagagagtttctatttaccgaagcacaagaagattttattgactttgttttcagtt 3151965  T
Q  318 ttctcaccttacctttgggagcagtagtgcatatgcttcaaggaatctcttctttaaattgcattgataatttatacaaaagcatgacagagttgtgtcc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3151966 ttctcaccttacctttgggagcagtagtgcatatgcttcaaggaatctcttctttaaattgcactgataatttatacaaaagcatgacagagttgtgtcc 3152065  T
Q  418 cagaagatatttaatctcacaggagctcaaagataagttaactaagcctcagtgtgccccacatttccgcgatagatcccaaatgttaccaattgacaca 517  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3152066 cagaagatatttaatctcacaggagctcaaagacaagttaactaagcctcagtgtgccccacatttccgcgatagatcccaaatgttaccaattgacaca 3152165  T
Q  518 gcatccttaccagtatattattgccatacatactataacagctataatgaagtgtattgtgctgatctaacaaaagaaaaggcgccttcgaagaataata 617  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3152166 gcatccttaccagtatattattgccatacatactataatagctataatgaagtgtattgtgctgatctaacaaaagaaaaggcgcgttcgaagaataata 3152265  T
Q  618 atggtgttcctgataagtttgtaccatataagcttaaatcggttggtcttaagtattttcattcatcatctacatttcaaggtttaggat--gggtgttg 715  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||  ||||||||    
T  3152266 atggtgttcctgataagtttgtaccatataagcttaaatcggttggtcttaagtattctcattaatcatctacatttcaaggtttaggatgggggtgttg 3152365  T
Q  716 gtggcatcatgctagaggaccatcaacatacatgttggcagatgacttgcgtgtgactccaatgtcgtccatatctactatgtcatatctaaatagatcc 815  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3152366 gtggcatcatgctagaggaccatcaacatacatgttggcagatgacttgcgtgtgactccaatgtcgtccatatctactatgtcatatctaaatagatcc 3152465  T
Q  816 aaagt 820  Q
    |||||    
T  3152466 aaagt 3152470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 287 - 404
Target Start/End: Original strand, 15381066 - 15381183
Alignment:
Q  287 caagaagattttattgacattgttttcagttttctcaccttacctttgggagcagtagtgcatatgcttcaaggaatctcttctttaaattgcattgata 386  Q
    ||||| |||||||| ||| ||||||| |||||||| ||||| || || |||| |||  ||||||||||||||||| ||||||  ||||  ||||||||||    
T  15381066 caagatgattttatcgactttgtttttagttttctaaccttccccttaggaggagtgttgcatatgcttcaaggattctctttgttaagctgcattgata 15381165  T
Q  387 atttatacaaaagcatga 404  Q
    ||||||||||||||||||    
T  15381166 atttatacaaaagcatga 15381183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 2e-36; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 250 - 412
Target Start/End: Original strand, 21200350 - 21200512
Alignment:
Q  250 aagaaaatcaactagagagtttctatttgctgaagcacaagaagattttattgacattgttttcagttttctcaccttacctttgggagcagtagtgcat 349  Q
    ||||||||||||| ||||| || | ||||||||||||  ||| ||||||||| || || ||||||||||||| || || |||||||||| |||  |||||    
T  21200350 aagaaaatcaactggagagattttgtttgctgaagcaagagatgattttattaactttattttcagttttctaactttccctttgggaggagtgttgcat 21200449  T
Q  350 atgcttcaaggaatctcttctttaaattgcattgataatttatacaaaagcatgacagagttg 412  Q
    |||||||||||  ||||||||||||| |||||||||||||||||||||||| |||| ||||||    
T  21200450 atgcttcaaggtttctcttctttaaactgcattgataatttatacaaaagcgtgaccgagttg 21200512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 292 - 400
Target Start/End: Original strand, 24284912 - 24285020
Alignment:
Q  292 agattttattgacattgttttcagttttctcaccttacctttgggagcagtagtgcatatgcttcaaggaatctcttctttaaattgcattgataattta 391  Q
    ||||||||||||| || |||| |||||||| ||||| || ||||| | |||  ||||||||||||||||| ||||||||||||  |||||||||||||||    
T  24284912 agattttattgactttatttttagttttctaaccttccccttggggggagtgttgcatatgcttcaaggattctcttctttaagctgcattgataattta 24285011  T
Q  392 tacaaaagc 400  Q
    || ||||||    
T  24285012 tataaaagc 24285020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 250 - 412
Target Start/End: Original strand, 21195104 - 21195266
Alignment:
Q  250 aagaaaatcaactagagagtttctatttgctgaagcacaagaagattttattgacattgttttcagttttctcaccttacctttgggagcagtagtgcat 349  Q
    ||||||||||||| ||||  || | ||||||||||||   || ||||||||| || || ||||||||||||| ||  | || || |||| |||  |||||    
T  21195104 aagaaaatcaactggagatattttgtttgctgaagcaggcgatgattttattaactttattttcagttttctaactctccccttaggaggagtgttgcat 21195203  T
Q  350 atgcttcaaggaatctcttctttaaattgcattgataatttatacaaaagcatgacagagttg 412  Q
    |||||| ||||  |||||||| ||||  |||| |||||||||||||||||| |||| ||||||    
T  21195204 atgcttgaaggtttctcttctctaaacagcatcgataatttatacaaaagcttgactgagttg 21195266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 251 - 405
Target Start/End: Original strand, 24238910 - 24239064
Alignment:
Q  251 agaaaatcaactagagagtttctatttgctgaagcacaagaagattttattgacattgttttcagttttctcaccttacctttgggagcagtagtgcata 350  Q
    |||| |||||| |||||| || | | |||||||||  | |||||||||   ||| || |||| ||||||||||| || || || |||| |||  ||||||    
T  24238910 agaagatcaacaagagaggttttgtatgctgaagctgaggaagattttgcggactttcttttgagttttctcactttccccttaggaggagtgttgcata 24239009  T
Q  351 tgcttcaaggaatctcttctttaaattgcattgataatttatacaaaagcatgac 405  Q
    ||||||||||| | |||||| |||  |||||||||||||||||||  ||||||||    
T  24239010 tgcttcaaggattttcttctataagctgcattgataatttatacaccagcatgac 24239064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 731 - 820
Target Start/End: Complemental strand, 24231425 - 24231336
Alignment:
Q  731 aggaccatcaacatacatgttggcagatgacttgcgtgtgactccaatgtcgtccatatctactatgtcatatctaaatagatccaaagt 820  Q
    |||||||||||  || ||| || |||| |||||| |||||| ||||||||||||||| ||||||||||||  |||||| ||||| |||||    
T  24231425 aggaccatcaatgtatatggtgacagacgacttgtgtgtgagtccaatgtcgtccatttctactatgtcacttctaaaaagatcaaaagt 24231336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 309 - 404
Target Start/End: Complemental strand, 24158733 - 24158638
Alignment:
Q  309 ttttcagttttctcaccttacctttgggagcagtagtgcatatgcttcaaggaatctcttctttaaattgcattgataatttatacaaaagcatga 404  Q
    ||||||||||||| || || ||| | ||||||||  |||| |||||  ||||| ||||||||||||| |||||||||| ||||||  |||||||||    
T  24158733 ttttcagttttctgacttttcctctaggagcagtgttgcaaatgctagaaggattctcttctttaaactgcattgatattttatatgaaagcatga 24158638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 270 - 396
Target Start/End: Complemental strand, 24231846 - 24231720
Alignment:
Q  270 ttctatttgctgaagcacaagaagattttattgacattgttttcagttttctcaccttacctttgggagcagtagtgcatatgcttcaaggaatctcttc 369  Q
    |||| |||| |||||||  ||| |||||||||||| ||||||| |||||||| || || || || |||| |||  ||||||||||||||||| | || ||    
T  24231846 ttctgtttgttgaagcaggagatgattttattgactttgtttttagttttctaacatttcccttaggaggagtgttgcatatgcttcaaggattttcgtc 24231747  T
Q  370 tttaaattgcattgataatttatacaa 396  Q
    |||||   |||||||||| || |||||    
T  24231746 tttaagcagcattgataacttgtacaa 24231720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 357 - 412
Target Start/End: Complemental strand, 24121255 - 24121200
Alignment:
Q  357 aaggaatctcttctttaaattgcattgataatttatacaaaagcatgacagagttg 412  Q
    ||||| ||||||||||||  |||||||||| |||||| ||||||||||| ||||||    
T  24121255 aaggattctcttctttaagctgcattgatattttatataaaagcatgactgagttg 24121200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 24232036 - 24231981
Alignment:
Q  76 taggtagttgatcttctcaaattatcattgttctcaaactcccctttgacagattt 131  Q
    |||||||||||||||||||| ||||||||  |||||||  |||||||||| |||||    
T  24232036 taggtagttgatcttctcaagttatcattaatctcaaagacccctttgaccgattt 24231981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 250 - 400
Target Start/End: Original strand, 10989588 - 10989740
Alignment:
Q  250 aagaaaatcaactagagagtttctatttgctgaagcacaagaagattttattgacattgttttcagttttctcaccttacctttg--ggagcagtagtgc 347  Q
    ||||||||||||| |||||||| | |||| ||||| |   | ||||||||||||| || ||||||||||||| || || || ||   |||| |||  ||     
T  10989588 aagaaaatcaactggagagtttttgtttgttgaaggaggggtagattttattgactttcttttcagttttcttacatttcccttataggaggagtgttgt 10989687  T
Q  348 atatgcttcaaggaatctcttctttaaattgcattgataatttatacaaaagc 400  Q
     ||||||||||||| ||||||||||||  ||||||||||||||||||| ||||    
T  10989688 gtatgcttcaaggattctcttctttaagctgcattgataatttatacagaagc 10989740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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