View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5905_low_10 (Length: 486)
Name: NF5905_low_10
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5905_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 7e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 29355513 - 29355680
Alignment:
| Q |
13 |
aatataaggttatcgttaaaaagaaaggcaaaatataatgtaatctcttaaagcatctcatgtggtgagtttgtatgaaactcgaacttggttccataac |
112 |
Q |
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| T |
29355513 |
aatataaggttatcgttaaaaagaaaggtaaaatataacgtaatctcttaaagcatctcatgtggtgagtttgtatgaaactcgaacttggttccataac |
29355612 |
T |
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| Q |
113 |
cactattaattggctcccacgataacacatgacacttatgtaactcaaacatattttgcttcaatgat |
180 |
Q |
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| T |
29355613 |
tactattaattggctcccactataacacatcacacttatgtaactcaaacatattttgcttcaatgat |
29355680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 212 - 465
Target Start/End: Original strand, 29355711 - 29355961
Alignment:
| Q |
212 |
gaaataatgtaacttttatgactcagcctatttagattggtctggtgatttgttagggacattgaaatgtgtttctttcaaagtctcatgttcttcaata |
311 |
Q |
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| T |
29355711 |
gaaataatgtaacttttatgactcggcctatttagattgatctggtggtttgctagggacattgaaaagtgtttctttcaaagtctcgtgttcttcaata |
29355810 |
T |
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| Q |
312 |
tcaatttcattaagttattttgagttctttgnnnnnnnnnnnnnnnncacttttatgaaactcacactcttaatgannnnnnnattggcaaaccttatga |
411 |
Q |
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| T |
29355811 |
tcaatttcagtaaattattttgagttctt---gaaaaggaaaaaaaacacttttatgaaactcacacttttaatgatttttttattggcaaaccttatga |
29355907 |
T |
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| Q |
412 |
aatcgagaaatatagtatgaagataggtgaggcagaatttttgaagcagacacg |
465 |
Q |
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| T |
29355908 |
aatcgagaaatatagtatgaagataggtgaggcagaatttttgaagcagacacg |
29355961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 180
Target Start/End: Original strand, 24579848 - 24579948
Alignment:
| Q |
80 |
agtttgtatgaaactcgaacttggttccataaccactattaattggctcccacgataacacatgacacttatgtaactcaaacatattttgcttcaatga |
179 |
Q |
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| T |
24579848 |
agtttgcaagaaattcgaacttgattccacacccaatattaagtgactcccacaatgtcacattacacttatgcaactcaaacattttttgctccaatga |
24579947 |
T |
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| Q |
180 |
t |
180 |
Q |
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| T |
24579948 |
t |
24579948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 158
Target Start/End: Complemental strand, 26772453 - 26772376
Alignment:
| Q |
81 |
gtttgtatgaaactcgaacttggttccataaccactattaattggctcccacgataacacatgacacttatgtaactc |
158 |
Q |
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| T |
26772453 |
gtttgtatgaaactcaaacttggttccataactactattaagcggctcccacaattctacatcacacttatgcaactc |
26772376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 46769763 - 46769699
Alignment:
| Q |
116 |
tattaattggctcccacgataacacatgacacttatgtaactcaaacatattttgcttcaatgat |
180 |
Q |
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| T |
46769763 |
tattaagtggctcccacaatgtcatatcacacttatgcaactcaaacatattttactccaatgat |
46769699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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