View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5905_low_12 (Length: 471)
Name: NF5905_low_12
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5905_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 7 - 467
Target Start/End: Complemental strand, 28842305 - 28841845
Alignment:
| Q |
7 |
ctaacccaacttggaagatcaaccatgtcatgatcataaccagaatatcctaacggaatcttccctgtaagcatttcaagaaggattataccaaagctgt |
106 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28842305 |
ctaacccaccttggaagatcaaccatgtcatgctcataaccagaatatcctaatggaatcttccctgtaagcatttcaagaaggattacaccaaagctgt |
28842206 |
T |
|
| Q |
107 |
aaacatcactcttctgagtggcgatcttccttgattcggttatttctggtgcacggtatccgttggatcttgacatggttgataaggtgttcataagggg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||| | | |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28842205 |
aaacatcactcttctgagtggcgatcttccttgattcgatcacttctggagcacggtatccattggatcttgacatggttgataaggtgttcataagggg |
28842106 |
T |
|
| Q |
207 |
agtaagtccaacatcagcgatgcaaccatcaagttcttgtgttatgagtacattggttgacttgatgttgccatgaataaattttggacctccctctttg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28842105 |
agtaagtccaacatcagcgatgcaaccatcaagttcttgtgttacgagtacattggttgacttgacgttgccatgaataaattttggacctccctctttg |
28842006 |
T |
|
| Q |
307 |
aggatggaaacaattcctttggcagctcccagcgcaatcttcattcttgaattccagtttaatggagttcttccattacccctgtttcctatattgttta |
406 |
Q |
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|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||| |
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| T |
28842005 |
tggatggaagcaattcctttggcagctcccagggcaatcttcattcttgaattccagtttaatggagttcttccttcacccctgtttcctatgttgttta |
28841906 |
T |
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| Q |
407 |
aaaattgaggacatattagaataatagaacaataggaattataagtcctgttatgtttcat |
467 |
Q |
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| T |
28841905 |
taaattaaggacatattagaataatagaacaataagaactataagttctgttatgtttcat |
28841845 |
T |
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Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 213 - 398
Target Start/End: Complemental strand, 42817606 - 42817421
Alignment:
| Q |
213 |
tccaacatcagcgatgcaaccatcaagttcttgtgttatgagtacattggttgacttgatgttgccatgaataaattttggacctccctctttgaggatg |
312 |
Q |
| |
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||||||||||| ||||| | ||||| ||||| |||||| |||||||||||||| |||||||| ||||| |||||||| | || || || | | ||| |
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| T |
42817606 |
tccaacatcagaaatgcagctatcaaattcttctgttattagtacattggttgatttgatgtttccatgtgtaaatttttggcccccttcggtatgaatg |
42817507 |
T |
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| Q |
313 |
gaaacaattcctttggcagctcccagcgcaatcttcattcttgaattccagtttaatggagttcttccattacccctgtttcctat |
398 |
Q |
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|| |||||||||| || ||||| || |||| ||||| |||||||||||||| ||||| |||||||| |||| |||||||||| |
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| T |
42817506 |
aaagcaattcctttagctgctccaagtgcaaccttcactcttgaattccagtcaaatggtgttcttcctgcacccttgtttcctat |
42817421 |
T |
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