View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5905_low_16 (Length: 372)
Name: NF5905_low_16
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5905_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 13 - 357
Target Start/End: Complemental strand, 16643361 - 16643012
Alignment:
| Q |
13 |
aatatgagttaaagatttagaattaccgattttggagcacacgaattcagcggaagtggtaaccagaagaggaggtgaatgataagatgaagattcagat |
112 |
Q |
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| T |
16643361 |
aatatgagttaaagatttagaattaccgattttggagcacacgaattcagcggaagtggtaaccagaagaggaggtgaatgataagatgaagattcagat |
16643262 |
T |
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| Q |
113 |
gttgctttattttcttacttaaaatgctaaataaaaaattaaattgaagatgctgaatatcacagaagttgaaaaataacaaaattagtatttagggatg |
212 |
Q |
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| T |
16643261 |
gttgctttattttcttacttaaaatgctaaataaaaaattaaattgaagatgctgaatatcacagaagttgaaaaataacaaaattagtatttagggatg |
16643162 |
T |
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| Q |
213 |
-----caatatcagtttcagcgatgtttattttgtttattaattttaagtttgaagtgattcttcaaagcctttattattcttctgttctggaattttca |
307 |
Q |
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| T |
16643161 |
caatgcaatatcagtttcagccatgtttactttgtttattaattttaagtttgaagtgattcttcaaagcttttattattcttctgttctggaattttca |
16643062 |
T |
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| Q |
308 |
gttttgnnnnnnncattgcttttgtcgattgccaatttcaataaagaatt |
357 |
Q |
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| T |
16643061 |
gttttgtttttttcattgcttttgtcgattgccaatttcaataaagaatt |
16643012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 13 - 357
Target Start/End: Complemental strand, 17617722 - 17617373
Alignment:
| Q |
13 |
aatatgagttaaagatttagaattaccgattttggagcacacgaattcagcggaagtggtaaccagaagaggaggtgaatgataagatgaagattcagat |
112 |
Q |
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| T |
17617722 |
aatatgagttaaagatttagaattaccgattttggagcacacgaattcagcggaagtggtaaccagaagaggaggtgaatgataagatgaagattcagat |
17617623 |
T |
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| Q |
113 |
gttgctttattttcttacttaaaatgctaaataaaaaattaaattgaagatgctgaatatcacagaagttgaaaaataacaaaattagtatttagggatg |
212 |
Q |
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| T |
17617622 |
gttgctttattttcttacttaaaatgctaaataaaaaattaaattgaagatgctgaatatcacagaagttgaaaaataacaaaattagtatttagggatg |
17617523 |
T |
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| Q |
213 |
-----caatatcagtttcagcgatgtttattttgtttattaattttaagtttgaagtgattcttcaaagcctttattattcttctgttctggaattttca |
307 |
Q |
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| T |
17617522 |
caatgcaatatcagtttcagccatgtttactttgtttattaattttaagtttgaagtgattcttcaaagcttttattattcttctgttctggaattttca |
17617423 |
T |
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| Q |
308 |
gttttgnnnnnnncattgcttttgtcgattgccaatttcaataaagaatt |
357 |
Q |
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| T |
17617422 |
gttttgtttttttcattgcttttgtcgattgccaatttcaataaagaatt |
17617373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 17012819 - 17012759
Alignment:
| Q |
117 |
ctttattttcttacttaaaatgctaaataaaaaattaaattgaagatgctgaatatcacag |
177 |
Q |
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|||| |||||||| |||||||| |||||| ||||| ||||||||||| ||||||| |||| |
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| T |
17012819 |
ctttgttttcttaattaaaatgaaaaataagaaatttaattgaagatgttgaatattacag |
17012759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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