View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5905_low_17 (Length: 364)
Name: NF5905_low_17
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5905_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 218 - 345
Target Start/End: Original strand, 43655612 - 43655737
Alignment:
| Q |
218 |
tgttctctttttaattgttatgcattaagatgtgcgtaagtgtttatggtatattaggagttattgttattatcattattgacaataaatagaaacatga |
317 |
Q |
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| T |
43655612 |
tgttctctttttaattgttatgcattaagatgtgcctaagtgtttatggtat--tagaagttattgttattatcattattgacattaaatagaaacatga |
43655709 |
T |
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| Q |
318 |
ttatcacaatttctaactacgacgttgc |
345 |
Q |
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| T |
43655710 |
ttatcacaatttctaactatgacgttgc |
43655737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 87 - 192
Target Start/End: Original strand, 43655516 - 43655622
Alignment:
| Q |
87 |
acttgtgacaatttaattgaaatccatatatccttaaacatttataaacatatgtgcatttgtatagattttaaatttgatgcgtacaat-aaatttgtt |
185 |
Q |
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| T |
43655516 |
acttgtgacaatttaattgaaatccatatatccttaaacatttatacacatatgtgcatttgtatagattttaaatttgatgcgtacaataaaatttgtt |
43655615 |
T |
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| Q |
186 |
ctctttt |
192 |
Q |
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||||||| |
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| T |
43655616 |
ctctttt |
43655622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 225 - 345
Target Start/End: Original strand, 8364610 - 8364728
Alignment:
| Q |
225 |
tttttaattgttatgcattaagatgtgcgtaagtgtttatggtatattaggagttattgttattatcattattgacaataaatagaaacatgattatcac |
324 |
Q |
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| T |
8364610 |
tttttaattgttatgcattaagatgtgcctaagtgtttatggtat--taggagttattgttattatcattattgacattaaatagaaacatgattatcac |
8364707 |
T |
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| Q |
325 |
aatttctaactacgacgttgc |
345 |
Q |
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| T |
8364708 |
aatttctaactatgacgttgc |
8364728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 8364507 - 8364607
Alignment:
| Q |
85 |
aaacttgtgacaatttaattgaaatccatatatccttaaacatttataaacatatgtgcatttgtatagattttaaatttgatgcgtacaataaatttgt |
184 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8364507 |
aaacttgtgacaatttaattgcaatccatatatccttaaacatttatagacatatgtgcatttgtatagattttaaatttgatgcctacaataaatttgt |
8364606 |
T |
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| Q |
185 |
t |
185 |
Q |
| |
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| |
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| T |
8364607 |
t |
8364607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 32404089 - 32404048
Alignment:
| Q |
86 |
aacttgtgacaatttaattgaaatccatatatccttaaacat |
127 |
Q |
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| T |
32404089 |
aacttgtgacaatttaattgaaatccatatatccgtaaacat |
32404048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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