View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5905_low_19 (Length: 343)
Name: NF5905_low_19
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5905_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 45167044 - 45167287
Alignment:
| Q |
13 |
aatatttagatagatgacacaagtcaagtctcttttatcttaattaaggatatcttatnnnnnnnn--tgttttgtacattaaaatatatagtgcaaagt |
110 |
Q |
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| T |
45167044 |
aatatttagatagatgacacaagtc-----tcttttatcttaatcaaatatatcttataaaaaaaaaatgttttgtacatcaaagtatatagtgcaaagt |
45167138 |
T |
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| Q |
111 |
gcacatcaaagtggtggtgaccggatttggattgatggagggagagggagagagattgtgttataagtga-------------gagagagcgattatata |
197 |
Q |
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| T |
45167139 |
gcacatcaaagtggtggtgaccggagttgggttggtggagggagagggagagagatttcgttctaagtgagagagagagtggtgagagagcaattatata |
45167238 |
T |
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| Q |
198 |
aaaattggtgaatactgagttannnnnnnacatgatatgagataaccta |
246 |
Q |
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| T |
45167239 |
aaaattggtgaatactgagttatttttttacatgatatgagataaccta |
45167287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 254 - 326
Target Start/End: Original strand, 45167559 - 45167631
Alignment:
| Q |
254 |
tatacaatatcaattcatctgatcttgtttcgatggaagaaactcccttttgcattgatgtagttatgacttt |
326 |
Q |
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| T |
45167559 |
tatacaatatcaattcatctgatcttgtttcgatggaagaaactcccttttgcattgatgtagttatgacttt |
45167631 |
T |
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