View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5905_low_20 (Length: 341)
Name: NF5905_low_20
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5905_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 15 - 336
Target Start/End: Complemental strand, 32894692 - 32894371
Alignment:
| Q |
15 |
tatatacttaactcaattcattgcattcatgtaataaagaacttagtaagtgctcatacaatataacaattaagtaactttaatcaattatttcacactt |
114 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
32894692 |
tatatacttaactcaattcattgcattcatgtgataaagaacttagtaagtgctcatacaatataacaattaagtaactttaatcaatcagttcacactt |
32894593 |
T |
|
| Q |
115 |
tataaaagagtctgcaaagattgtctcaatgaagaattatttatatctaactaacaagagaatattatatcatgcttacatatgcatataaagaacttta |
214 |
Q |
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||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
32894592 |
tataagagagtttgcaaagattgtctcagtgaagaattatttatatctaactaacaagagaatattatatcctgcttacatatgcatataaagaatttta |
32894493 |
T |
|
| Q |
215 |
acattttgatcaccttaactacttctgtgcaagacgtacacacataatttttcttaaggcatcttcccatatatggtttacatgttatatagaccacaac |
314 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32894492 |
acattttgatcactttaactacttctgtgcaagacatacacacataatttttcttaaggcatcttcccatatatggcttacatgttatatagaccacaac |
32894393 |
T |
|
| Q |
315 |
agaattttctatccacatgtat |
336 |
Q |
| |
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||||||| |||||||||||||| |
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| T |
32894392 |
agaatttactatccacatgtat |
32894371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 15 - 303
Target Start/End: Complemental strand, 26051922 - 26051634
Alignment:
| Q |
15 |
tatatacttaactcaattcattgcattcatgtaataaagaacttagtaagtgctcatacaatataacaattaagtaactttaatcaattatttcacactt |
114 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| | ||||||||| |
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| T |
26051922 |
tatatacttaacttaattcattgcattcatgtaataaagaacttagtaagtactcatacaatataaaaattaagtaactttaatcaatcagttcacactt |
26051823 |
T |
|
| Q |
115 |
tataaaagagtctgcaaagattgtctcaatgaagaattatttatatctaactaacaagagaatattatatcatgcttacatatgcatataaagaacttta |
214 |
Q |
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||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26051822 |
tataagagagtttgcaaagattgtctcagtgaagaattatttatatctaactaacaagagaatattatatcctgcttacatatgcatataaagaacttta |
26051723 |
T |
|
| Q |
215 |
acattttgatcaccttaactacttctgtgcaagacgtacacacataatttttcttaaggcatcttcccatatatggtttacatgttata |
303 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26051722 |
acattttgatcactttaactacttctgtgcaagacgtacacacataatttttcttaaggcatcttcccatatatggtttacatgttata |
26051634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 27076825 - 27076603
Alignment:
| Q |
15 |
tatatacttaactcaattcattgcattcatgtaataaagaacttagtaagtgctcatacaatataacaattaagtaactttaatcaattatttcacactt |
114 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
27076825 |
tatatacttaactaaattcattgcattcatgtaataaagaacttagtaagtgctcatacaatataacaattaagtaactttaatcaatcagttcacactt |
27076726 |
T |
|
| Q |
115 |
tataaaagagtctgcaaagattgtctcaatgaagaattatttatatctaactaacaagagaatattatatcatgcttacatatgcatataaagaacttta |
214 |
Q |
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||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27076725 |
tataacagagtttgcaaagattgtctcagtgaagaattatttatatctaactaacaagagaatattatatcctgcttacatatgcatataaagaacttta |
27076626 |
T |
|
| Q |
215 |
acattttgatcaccttaactact |
237 |
Q |
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||||||||||||| ||||||||| |
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| T |
27076625 |
acattttgatcactttaactact |
27076603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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