View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5905_low_21 (Length: 320)
Name: NF5905_low_21
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5905_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 34976468 - 34976759
Alignment:
| Q |
19 |
aatctcttttctcaaagaggataataggttcagttctgtaccgaatacttcatcagggtccttaggattgtcccatttctctccttcagttattatgttt |
118 |
Q |
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| T |
34976468 |
aatctcttttctcaaagaggataataggttcagttctgtaccgaatacttcatcagggtccttaggattgtcccatttctctccttcagttattatgttt |
34976567 |
T |
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| Q |
119 |
ttcaatattccaccatccttggtaatgtccttgacacttgtccaagacagcaactccacatcaaactgaagagctgcgtttgggggaatagtgggaggag |
218 |
Q |
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| T |
34976568 |
ttcaatattccaccatccttggtaatgtccttgacacttgtccaagacagcaactccacatcaaactgaagagctgcgtttgggggaatagtgggaggag |
34976667 |
T |
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| Q |
219 |
acccagattctccataagccaactctgggggtattgtgaaaatggcattttcacccttcttcatggttttgataccttcatcccaccctttg |
310 |
Q |
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| T |
34976668 |
acccagattctccataagccaactctgggggtattgtgaaaatggcattttcacccttcttcatggttttgataccttcatcccaccctttg |
34976759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 146 - 309
Target Start/End: Original strand, 3496312 - 3496475
Alignment:
| Q |
146 |
tccttgacacttgtccaagacagcaactccacatcaaactgaagagctgcgtttgggggaatagtgggaggagacccagattctccataagccaactctg |
245 |
Q |
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| T |
3496312 |
tccttcacactagtccaagacagcagctcaacatcaaattgcagagtagcattaggaggaatagttggaggagaaccagattcaccataagctaactcag |
3496411 |
T |
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| Q |
246 |
ggggtattgtgaaaatggcattttcacccttcttcatggttttgataccttcatcccacccttt |
309 |
Q |
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| T |
3496412 |
gtggaatggtgaaaagagcattttcacctttcttcatggttttaattccctcatcccatccttt |
3496475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 308
Target Start/End: Original strand, 18848789 - 18849040
Alignment:
| Q |
57 |
taccgaatacttcatcagggtccttaggattgtcccatttctctccttcagttattatgtttttcaatattccaccatccttggtaatgtccttgacact |
156 |
Q |
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|||| |||||||||||||| ||||| || || ||||||||||| || || | | ||| | || ||||| |||||||| || |||||||| ||||| |
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| T |
18848789 |
tacccaatacttcatcaggatccttggggttctcccatttctccccctctttaagtatcctcttaaatataccaccatctttacatatgtccttcacact |
18848888 |
T |
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| Q |
157 |
tgtccaagacagcaactccacatcaaactgaagagctgcgtttgggggaatagtgggaggagacccagattctccataagccaactctgggggtattgtg |
256 |
Q |
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| T |
18848889 |
ggtccaagacaacatctcaacatcaaattggagcgtcgcattaggaggaattgtcggaggtgaaccagattcaccataagctagctcgggagggatggtg |
18848988 |
T |
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| Q |
257 |
aaaatggcattttcacccttcttcatggttttgataccttcatcccaccctt |
308 |
Q |
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|| | ||||||||||| |||||||||||||| |||||||||||||| |||| |
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| T |
18848989 |
aagagtgcattttcacctttcttcatggttttaataccttcatcccatcctt |
18849040 |
T |
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