View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5905_low_23 (Length: 294)
Name: NF5905_low_23
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5905_low_23 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 29355243 - 29355536
Alignment:
| Q |
1 |
tgaaccaagttcggatagagtctaccaagaagagatccgaaataccggccaaggaggagcggtggatcatgagatcaatgctagaataaacttctaactt |
100 |
Q |
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| T |
29355243 |
tgaaccaagttcggacagagtctaccaagaagaggtccgaaataccgaccaaggaggagcggtggatcatgagatcaatgctagaataaacttctaactt |
29355342 |
T |
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| Q |
101 |
agttaggaagtttgcacaactattttctttccgaaatgatgcaaatatgtcaatcttgattaagactttttgtcttagatcatcataacatacttgtgaa |
200 |
Q |
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| T |
29355343 |
agttaggaagtttgcacaactattttctttccgaaatgatgcaaatatgtcaatcttgattaagactttttgtcttagatcatcgtaacatacttgtgaa |
29355442 |
T |
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| Q |
201 |
acattgaggtttgatcatagaggatatcaccataatgatgagaatatgtgaaacatataatgtcatgaaaaatataaggttatcgttaaaaaga |
294 |
Q |
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| T |
29355443 |
acattgaagtttgatcatagaggatatcaccataatgatgagaatatgtgaaacatataatgtcatgaaaaatataaggttatcgttaaaaaga |
29355536 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 33256771 - 33256711
Alignment:
| Q |
69 |
atgagatcaatgctagaataaacttctaacttagttaggaagtttgcacaactattttctt |
129 |
Q |
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||||||||||||||| || ||||||||||||||| | ||||| || | |||||||||||| |
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| T |
33256771 |
atgagatcaatgctaaaagaaacttctaacttagcaacgaagtatgtataactattttctt |
33256711 |
T |
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