View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5905_low_25 (Length: 270)
Name: NF5905_low_25
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5905_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 1595763 - 1595521
Alignment:
| Q |
14 |
ttctctcacagctctatgaacccaactacaaagatccacaccattagtcccttgtggagctgagcacatagaaactttcccagttacaagttctattaaa |
113 |
Q |
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| T |
1595763 |
ttctctcacagctctatgaacccaactacaaagatccacaccattagtcccttgtggagctgagcacatagaaactttcccagttacaagttctattaaa |
1595664 |
T |
|
| Q |
114 |
agtgatccgtaactccaaacatctgattgcattgtaacnnnnnnngcataaccatattcaggtgatttgtaaacaaccatatgttgagctgcaattggtt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1595663 |
agtgatccgtaactccaaacatctgattgcattgtaactttttttgcataaccatattcaggtgatttgtaaacaaccatatgttgagctgcaattggtt |
1595564 |
T |
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| Q |
214 |
gtgctattaacgaggcaaggctgaagtcagatacaagaactga |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1595563 |
gtgctattaacgaggcaaggctgaagtcagatacaagaactga |
1595521 |
T |
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