View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5905_low_26 (Length: 253)
Name: NF5905_low_26
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5905_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 41302141 - 41301924
Alignment:
| Q |
21 |
tatgtaagtggcaaagattactatttacacaatatatatacatccatctagtt-aaatctaggaactatatagtaactgtgtnnnnnnnnnnnnnncaag |
119 |
Q |
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| T |
41302141 |
tatgtaagtggcaaagattactatttacacaatatatatacatccatctagtttaaatctaggaactatatagtaactgtgttatatata------caag |
41302048 |
T |
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| Q |
120 |
gacacatgtacatacaaaaggaacaatgccaccaaccatatatgaatcactcccaacccatcaactttttccagactcctttctcaatcttgttccttgg |
219 |
Q |
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| T |
41302047 |
gacacatgtacatacaaaaggaacaatgccaccaaccatatatgaatcactcccaacccatcaactttttccagactcctttctcaatcttgttccttgg |
41301948 |
T |
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| Q |
220 |
aaaagataagccctccccttcatc |
243 |
Q |
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| T |
41301947 |
aaaagataagccctccccttcatc |
41301924 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 27661785 - 27661855
Alignment:
| Q |
170 |
tcccaacccatcaactttttccagactcctttctcaatcttgttccttggaaaagataagccctccccttc |
240 |
Q |
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| T |
27661785 |
tcccaacccatcagcatcttccaaactccctcctcaatcttgttccttggaacagacatcccctccccttc |
27661855 |
T |
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