View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5905_low_27 (Length: 251)
Name: NF5905_low_27
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5905_low_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 40882675 - 40882536
Alignment:
| Q |
1 |
aagttcccaagttaccaaatattttttactatgaatattgattcttcataaatatcatatttttccattgtcaagaaagtcaaagcgaatatagttcaga |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40882675 |
aagttcacaagttaccaaatattttttactatgaatattgattcttcataaatatcatatttttccattgtcaagaaagtcaaagcgaatatagttcaga |
40882576 |
T |
|
| Q |
101 |
caaatacacattcgaaacttcaaaaagaactgcctcttat |
140 |
Q |
| |
|
||||||||||||||| |||| ||||||||| ||||||||| |
|
|
| T |
40882575 |
caaatacacattcgagacttaaaaaagaaccgcctcttat |
40882536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 8909327 - 8909466
Alignment:
| Q |
1 |
aagttcccaagttaccaaatattttttactatgaatattgattcttcataaatatcatatttttccattgtcaagaaagtcaaagcgaatatagttcaga |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8909327 |
aagttcacaagttaccaaatattttttactatgaatattgattcttcataaatatcatatttttccattgtcaagaaattcaaagcgaatatagttcaga |
8909426 |
T |
|
| Q |
101 |
caaatacacattcgaaacttcaaaaagaactgcctcttat |
140 |
Q |
| |
|
||||||||||||| | || ||||||||||||||| ||||| |
|
|
| T |
8909427 |
caaatacacattcaagacatcaaaaagaactgccacttat |
8909466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 244
Target Start/End: Original strand, 8909543 - 8909571
Alignment:
| Q |
216 |
ggccacggaatcactgttatcctttgcta |
244 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
8909543 |
ggccacggaatcactgttatcctttgcta |
8909571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University