View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5905_low_30 (Length: 248)

Name: NF5905_low_30
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5905_low_30
NF5905_low_30
[»] chr7 (2 HSPs)
chr7 (1-238)||(16643635-16643872)
chr7 (1-238)||(17617996-17618233)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 16643635 - 16643872
Alignment:
Q  1 tatgttgcctaatttgtcattgaaccaataaacaaaaacgaaaaccacattcacaatcatttagcaacaaatgcaagaaaatataatcctaattcgtatt 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  16643635 tatgttgcctaatttgtcattgaaccaataaacataaacgaaaaccacattcacaatcatttagcaacaaatgcaagaaaatataattttaattcgtatt 16643734  T
Q  101 aataaagcatgctagccatgtatgtgtacaaggttcttggaaaatttaagtgcacaaggcaaaagtaataccttttgagtctcttcaaaggtaaccatcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16643735 aataaagcatgctagccatgtatgtgtacaaggttcttggaaaatttaagtgcacaaggcaaaagtaataccttttgagtctcttcaaaggtaaccatcc 16643834  T
Q  201 aaatcaccattacgcagaaaaataataatcgtaatatt 238  Q
    |||| ||||| ||||||||| |||||||||||||||||    
T  16643835 aaattaccatcacgcagaaatataataatcgtaatatt 16643872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 17617996 - 17618233
Alignment:
Q  1 tatgttgcctaatttgtcattgaaccaataaacaaaaacgaaaaccacattcacaatcatttagcaacaaatgcaagaaaatataatcctaattcgtatt 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  17617996 tatgttgcctaatttgtcattgaaccaataaacataaacgaaaaccacattcacaatcatttagcaacaaatgcaagaaaatataattttaattcgtatt 17618095  T
Q  101 aataaagcatgctagccatgtatgtgtacaaggttcttggaaaatttaagtgcacaaggcaaaagtaataccttttgagtctcttcaaaggtaaccatcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17618096 aataaagcatgctagccatgtatgtgtacaaggttcttggaaaatttaagtgcacaaggcaaaagtaataccttttgagtctcttcaaaggtaaccatcc 17618195  T
Q  201 aaatcaccattacgcagaaaaataataatcgtaatatt 238  Q
    |||| ||||| ||||||||| |||||||||||||||||    
T  17618196 aaattaccatcacgcagaaatataataatcgtaatatt 17618233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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