View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5905_low_33 (Length: 239)

Name: NF5905_low_33
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5905_low_33
NF5905_low_33
[»] chr3 (10 HSPs)
chr3 (3-206)||(25310023-25310227)
chr3 (24-122)||(34296517-34296616)
chr3 (3-103)||(36033642-36033742)
chr3 (3-107)||(9662396-9662499)
chr3 (4-66)||(34296529-34296591)
chr3 (131-188)||(54987051-54987108)
chr3 (45-103)||(20001797-20001855)
chr3 (58-103)||(9496388-9496433)
chr3 (46-103)||(49657940-49657996)
chr3 (47-103)||(25336443-25336499)
[»] chr5 (6 HSPs)
chr5 (3-107)||(24025103-24025207)
chr5 (18-107)||(19825756-19825844)
chr5 (46-103)||(38476629-38476686)
chr5 (51-103)||(35302079-35302131)
chr5 (38-103)||(17825649-17825713)
chr5 (1-46)||(28538558-28538603)
[»] chr7 (22 HSPs)
chr7 (4-102)||(47113171-47113269)
chr7 (3-165)||(43517030-43517193)
chr7 (5-107)||(5776803-5776905)
chr7 (6-107)||(10877152-10877253)
chr7 (24-120)||(39296571-39296668)
chr7 (3-107)||(23373540-23373643)
chr7 (3-107)||(22589251-22589354)
chr7 (42-103)||(6798070-6798130)
chr7 (36-104)||(47113201-47113269)
chr7 (3-98)||(21801303-21801397)
chr7 (46-103)||(15681685-15681742)
chr7 (46-103)||(24464663-24464720)
chr7 (3-122)||(21809866-21809985)
chr7 (9-104)||(15867555-15867650)
chr7 (130-169)||(42271352-42271391)
chr7 (130-168)||(3562678-3562716)
chr7 (37-103)||(4193638-4193703)
chr7 (46-103)||(4571503-4571560)
chr7 (46-103)||(25002795-25002851)
chr7 (46-103)||(26126342-26126398)
chr7 (38-103)||(43251352-43251417)
chr7 (49-101)||(3403214-3403266)
[»] chr1 (12 HSPs)
chr1 (3-107)||(6285325-6285429)
chr1 (3-107)||(28552466-28552570)
chr1 (3-108)||(14366386-14366491)
chr1 (24-103)||(39386494-39386573)
chr1 (29-107)||(34500404-34500482)
chr1 (3-105)||(36486344-36486446)
chr1 (46-103)||(21148066-21148123)
chr1 (46-103)||(16551803-16551860)
chr1 (46-103)||(22786118-22786174)
chr1 (46-110)||(29182160-29182223)
chr1 (28-108)||(10341143-10341223)
chr1 (130-183)||(28552308-28552363)
[»] chr4 (17 HSPs)
chr4 (3-107)||(16291830-16291934)
chr4 (30-108)||(5932229-5932306)
chr4 (4-78)||(16291863-16291937)
chr4 (5-107)||(16588539-16588641)
chr4 (3-96)||(55264967-55265059)
chr4 (3-65)||(14857424-14857486)
chr4 (46-99)||(4098748-4098801)
chr4 (36-101)||(9397281-9397346)
chr4 (46-103)||(51291329-51291386)
chr4 (3-107)||(12101275-12101379)
chr4 (28-64)||(43336145-43336181)
chr4 (48-103)||(24626382-24626437)
chr4 (35-108)||(13764290-13764363)
chr4 (4-64)||(16588570-16588630)
chr4 (4-64)||(16964656-16964716)
chr4 (36-104)||(43336090-43336157)
chr4 (26-106)||(53097271-53097351)
[»] chr8 (6 HSPs)
chr8 (4-101)||(2053234-2053331)
chr8 (29-107)||(39910213-39910291)
chr8 (3-64)||(13190789-13190850)
chr8 (18-63)||(22845721-22845766)
chr8 (38-110)||(15869490-15869560)
chr8 (130-187)||(38630054-38630113)
[»] chr2 (12 HSPs)
chr2 (18-189)||(32677992-32678166)
chr2 (18-107)||(13645965-13646054)
chr2 (3-86)||(2123447-2123530)
chr2 (3-96)||(36199507-36199600)
chr2 (3-65)||(33199546-33199608)
chr2 (49-103)||(331800-331854)
chr2 (36-103)||(2190620-2190687)
chr2 (130-169)||(6763963-6764002)
chr2 (130-169)||(15735083-15735122)
chr2 (36-97)||(2123468-2123529)
chr2 (36-97)||(33199546-33199607)
chr2 (18-66)||(331805-331853)
[»] scaffold0019 (1 HSPs)
scaffold0019 (24-120)||(35849-35946)
[»] chr6 (6 HSPs)
chr6 (3-107)||(34192228-34192332)
chr6 (3-107)||(29365342-29365446)
chr6 (18-64)||(12193542-12193588)
chr6 (46-103)||(4013826-4013883)
chr6 (139-187)||(15298739-15298789)
chr6 (15-64)||(9620513-9620562)
[»] scaffold0002 (1 HSPs)
scaffold0002 (46-103)||(455018-455075)


Alignment Details
Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 25310227 - 25310023
Alignment:
Q  3 gtaaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaa 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  25310227 gtaaagataaatggccaaaatagcttatttccctaaagatagaggtcaaaaaaatcatatttccatgaaattagagtgtcaaaagagcatatttccctaa 25310128  T
Q  103 agata-aggacagaattttcannnnnnnaataggagaccaaaatcgtaacattttgaaacttagagggaaaaatgcactttaacctttattctattgatt 201  Q
    ||||| ||| || |||||| |       |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25310127 agatagagggcaaaatttttatttttttaataggagaccaaaattgtaacattttgaaacttagaggaaaaaatgcactttaacctttattctattgatt 25310028  T
Q  202 tccta 206  Q
    |||||    
T  25310027 tccta 25310023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 34296517 - 34296616
Alignment:
Q  24 agcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaagat-aaggacagaattttca 122  Q
    |||||||||||||||||||| |||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||    
T  34296517 agcttatttccctaaagataaagggtcaaaagagcatatttccataaagttagagggtcaaaagagcatatttccctaaagataaaggacaaaattttca 34296616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 36033742 - 36033642
Alignment:
Q  3 gtaaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaa 102  Q
    ||||| ||| |||| ||||| ||||||||||| |||||||||||||| | |||| ||||||||||| ||||||||| ||||||||| |||||||| ||||    
T  36033742 gtaaatatagatggtcaaaagagcttatttccttaaagatagagggttagaagagcatatttccataaagttagagggtcaaaagaacatatttctctaa 36033643  T
Q  103 a 103  Q
    |    
T  36033642 a 36033642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 9662396 - 9662499
Alignment:
Q  3 gtaaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaa 102  Q
    ||||||||||  || ||||| || ||||||||||||  ||||||||| ||| |||||||||||||| ||||||||| || |||| |||| |||| |||||    
T  9662396 gtaaagataaggggtcaaaagagattatttccctaattatagagggttaaacgatcatatttccataaagttagagggttaaaaaagca-atttacctaa 9662494  T
Q  103 agata 107  Q
    |||||    
T  9662495 agata 9662499  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 34296529 - 34296591
Alignment:
Q  4 taaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttcc 66  Q
    |||||||||| || ||||| ||| ||||||| ||||| ||||||||||||||| |||||||||    
T  34296529 taaagataaagggtcaaaagagcatatttccataaagttagagggtcaaaagagcatatttcc 34296591  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 54987051 - 54987108
Alignment:
Q  131 ataggagaccaaaatcgtaacattttgaaacttagagggaaaaatgcactttaacctt 188  Q
    ||||| ||| ||||||| ||| ||||||||||||| ||||||| ||||||||||||||    
T  54987051 ataggggactaaaatcgcaactttttgaaacttagggggaaaagtgcactttaacctt 54987108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 20001855 - 20001797
Alignment:
Q  45 agggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaa 103  Q
    |||| ||| ||||||||||||| | | ||||| | ||||||||||||||||||||||||    
T  20001855 aggggcaagagatcatatttcccttatgttagggggtcaaaagagcatatttccctaaa 20001797  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 9496388 - 9496433
Alignment:
Q  58 catatttccatgaagttagagtgtcaaaagagcatatttccctaaa 103  Q
    ||||||||| | | ||||||| ||||||||||||||||||||||||    
T  9496388 catatttcctttatgttagagggtcaaaagagcatatttccctaaa 9496433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 49657940 - 49657996
Alignment:
Q  46 gggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaa 103  Q
    ||||||||||||||||||| | | | ||||| | ||||||||||||||||||||||||    
T  49657940 gggtcaaaagatcatattttccttatgttaggg-gtcaaaagagcatatttccctaaa 49657996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 25336499 - 25336443
Alignment:
Q  47 ggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaa 103  Q
    ||||||||| |||||||||| | | ||||| | |||||||||||||| |||||||||    
T  25336499 ggtcaaaaggtcatatttcccttatgttagggggtcaaaagagcataattccctaaa 25336443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 24025207 - 24025103
Alignment:
Q  3 gtaaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaa 102  Q
    ||||||||||| || ||||| |||||||||| |||||||||||| || |||||| ||||||||| | ||||||||| |||||||||||||||||||||||    
T  24025207 gtaaagataaagggtcaaaagagcttatttctctaaagatagagtgttaaaagagcatatttccgtaaagttagagggtcaaaagagcatatttccctaa 24025108  T
Q  103 agata 107  Q
    |||||    
T  24025107 agata 24025103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 19825756 - 19825844
Alignment:
Q  18 caaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaagata 107  Q
    ||||||| |||||||| |||| |||||||||||||||||  |||||||| | || |||||| || |||||||||||||| |||| |||||    
T  19825756 caaaatatcttatttctctaatgatagagggtcaaaagagtatatttccctaaaattagag-gttaaaagagcatattttcctatagata 19825844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 38476629 - 38476686
Alignment:
Q  46 gggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaa 103  Q
    ||||||||||||||||||||| | | ||||  | ||||||||||||||||||||||||    
T  38476629 gggtcaaaagatcatatttcccttatgttatggggtcaaaagagcatatttccctaaa 38476686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 35302079 - 35302131
Alignment:
Q  51 aaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaa 103  Q
    |||||||||||||| ||| | ||||| | ||||||||||||||||||||||||    
T  35302079 aaaagatcatatttacattatgttagggggtcaaaagagcatatttccctaaa 35302131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 17825649 - 17825713
Alignment:
Q  38 aagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaa 103  Q
    |||||| |||||||||||| ||||||||  | | ||||| | ||||||||||||||||||||||||    
T  17825649 aagataaagggtcaaaagaacatatttctcttatgttaggg-gtcaaaagagcatatttccctaaa 17825713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 28538558 - 28538603
Alignment:
Q  1 tcgtaaagataaatggccaaaatagcttatttccctaaagatagag 46  Q
    ||||||||||||| |||||| ||  |||||||||||||||||||||    
T  28538558 tcgtaaagataaagggccaacatgtcttatttccctaaagatagag 28538603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 47113269 - 47113171
Alignment:
Q  4 taaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaa 102  Q
    |||||||||| |||||||| | ||||||||||||||||||||||| ||||||| ||||||||| | ||||||||| |||||||||||||||||| ||||    
T  47113269 taaagataaagggccaaaagatcttatttccctaaagatagagggccaaaagagcatatttccctaaagttagagggtcaaaagagcatatttctctaa 47113171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 165
Target Start/End: Original strand, 43517030 - 43517193
Alignment:
Q  3 gtaaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaa 102  Q
    ||||||||||| || || || || |||||| |||||||||||||||| |||||| ||||||| ||||||||||||| ||||||||||| |||||||||||    
T  43517030 gtaaagataaagggtcagaagagtttattttcctaaagatagagggttaaaagagcatattttcatgaagttagagagtcaaaagagcgtatttccctaa 43517129  T
Q  103 agata-aggacagaattttcannnnnnnaataggagaccaaaatcgtaacattttgaaacttag 165  Q
    | ||| ||| || |  |||||       |||||||| ||||||||| |||||||| ||||||||    
T  43517130 aaatagagggcaaagatttcatttttttaataggaggccaaaatcgcaacattttaaaacttag 43517193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 5776905 - 5776803
Alignment:
Q  5 aaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaag 104  Q
    |||||| ||||||||||| ||||||||||||| |||||||||||  |||||| ||||||||  | || |||||| ||||||||||||||||||| | |||    
T  5776905 aaagatgaatggccaaaagagcttatttccctcaagatagagggctaaaagagcatatttctctaaaattagagagtcaaaagagcatatttcctttaag 5776806  T
Q  105 ata 107  Q
    |||    
T  5776805 ata 5776803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 10877152 - 10877253
Alignment:
Q  6 aagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaaga 105  Q
    |||||||| |||||||||| |||||||| |||||| |||||| |||||||| ||||||||| |  ||||| || ||||||| ||||||||||| ||||||    
T  10877152 aagataaagggccaaaatatcttatttctctaaaggtagaggatcaaaagagcatatttccctagagttaaagggtcaaaaaagcatatttccataaaga 10877251  T
Q  106 ta 107  Q
    ||    
T  10877252 ta 10877253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 39296668 - 39296571
Alignment:
Q  24 agcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaagata-aggacagaatttt 120  Q
    |||||||||  ||||||||| ||| | ||||||  |||||||||| ||||||||| |||||||||||||||||||||||||||| |||||| ||||||    
T  39296668 agcttatttatctaaagataaaggattaaaagagtatatttccataaagttagagggtcaaaagagcatatttccctaaagatagaggacaaaatttt 39296571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 23373540 - 23373643
Alignment:
Q  3 gtaaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaa 102  Q
    ||||| ||||| || ||||| ||||||||||| ||||||| ||| || |||||| ||||||||||| | ||||||| ||| |||||||||||||||||||    
T  23373540 gtaaatataaagggtcaaaagagcttatttcc-taaagatggagagttaaaagagcatatttccataatgttagagggtcgaaagagcatatttccctaa 23373638  T
Q  103 agata 107  Q
    |||||    
T  23373639 agata 23373643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 22589354 - 22589251
Alignment:
Q  3 gtaaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaa 102  Q
    |||||||||||  | ||||| ||||||||| ||| ||||||||||  ||||||| |||||||  || ||||||||| ||||||||||||||||||| |||    
T  22589354 gtaaagataaagagtcaaaagagcttattttcctgaagatagaggaacaaaagagcatatttt-ataaagttagagggtcaaaagagcatatttccttaa 22589256  T
Q  103 agata 107  Q
    |||||    
T  22589255 agata 22589251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 6798070 - 6798130
Alignment:
Q  42 tagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaa 103  Q
    ||||||||||||| ||||||||||| | | ||||||| ||||||||||||||||||||||||    
T  6798070 tagagggtcaaaa-atcatatttcccttatgttagagggtcaaaagagcatatttccctaaa 6798130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 47113269 - 47113201
Alignment:
Q  36 taaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaag 104  Q
    |||||||| |||| ||||||||| ||||||| | ||| ||||| | |||||||||||||||||||||||    
T  47113269 taaagataaagggccaaaagatcttatttccctaaagatagagggccaaaagagcatatttccctaaag 47113201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 21801397 - 21801303
Alignment:
Q  3 gtaaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttcc 98  Q
    ||||||||||| || ||||| |||||||||| ||||| ||| |  ||||||| | ||||||| ||| ||||||||| ||||||||| |||||||||    
T  21801397 gtaaagataaagggtcaaaagagcttatttctctaaa-ataaatagtcaaaataacatattttcataaagttagagggtcaaaagaacatatttcc 21801303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 15681742 - 15681685
Alignment:
Q  46 gggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaa 103  Q
    |||||||||||||||| |||| | | ||||| | ||||||||||||||||||||||||    
T  15681742 gggtcaaaagatcatagttcccttatgttagggggtcaaaagagcatatttccctaaa 15681685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 24464720 - 24464663
Alignment:
Q  46 gggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaa 103  Q
    ||||||||||||||||||||| | | ||||| | ||||||||| ||||||||||||||    
T  24464720 gggtcaaaagatcatatttcccttatgttagggggtcaaaagaacatatttccctaaa 24464663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 21809985 - 21809866
Alignment:
Q  3 gtaaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaa 102  Q
    ||||||||||| || ||||||||||||||||  |||| ||| |  ||||||| | ||||||| ||| ||||||||| | ||||||| ||||||||| | |    
T  21809985 gtaaagataaagggtcaaaatagcttatttctttaaa-ataaatagtcaaaataacatatttgcataaagttagagggacaaaagaacatatttccgtta 21809887  T
Q  103 agata-aggacagaattttca 122  Q
    | ||| |||||| ||||||||    
T  21809886 atatagaggacacaattttca 21809866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 15867555 - 15867650
Alignment:
Q  9 ataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaag 104  Q
    ||||| ||| |||||| | |||||| || |||| | | || ||||||||||||||||  | ||| ||||| ||||||||||||||||| |||||||    
T  15867555 ataaagggcaaaaataacatatttctcttaagacaaaagggcaaaagatcatatttctctaaagatagagggtcaaaagagcatattttcctaaag 15867650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 169
Target Start/End: Complemental strand, 42271391 - 42271352
Alignment:
Q  130 aataggagaccaaaatcgtaacattttgaaacttagaggg 169  Q
    |||||||| ||||||||| |||||||||||||||||||||    
T  42271391 aataggaggccaaaatcgcaacattttgaaacttagaggg 42271352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 3562678 - 3562716
Alignment:
Q  130 aataggagaccaaaatcgtaacattttgaaacttagagg 168  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  3562678 aatagggggccaaaatcgtaacattttgaaacttagagg 3562716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 4193703 - 4193638
Alignment:
Q  37 aaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaa 103  Q
    |||||||  ||||||||||||||||||||  | | |||| || ||||||||||||||||||||||||    
T  4193703 aaagataaggggtcaaaagatcatatttctcttatgtta-agggtcaaaagagcatatttccctaaa 4193638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 4571503 - 4571560
Alignment:
Q  46 gggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaa 103  Q
    ||||||||||||||||||||| | | ||||  | || |||||||||||||||||||||    
T  4571503 gggtcaaaagatcatatttcccttatgttatggggtaaaaagagcatatttccctaaa 4571560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 25002851 - 25002795
Alignment:
Q  46 gggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaa 103  Q
    ||||||||||||||||||||| | | ||||| | ||||||||||||| ||||||||||    
T  25002851 gggtcaaaagatcatatttcctttatgttag-gggtcaaaagagcatgtttccctaaa 25002795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 26126398 - 26126342
Alignment:
Q  46 gggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaa 103  Q
    ||||||||||||||||||||| | | ||||| | ||||||| ||||||||||||||||    
T  26126398 gggtcaaaagatcatatttcccttatgttag-gggtcaaaaaagcatatttccctaaa 26126342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 43251417 - 43251352
Alignment:
Q  38 aagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaa 103  Q
    |||||| || ||||||||||||||||||| | | ||||||| |||||||||| | |||| ||||||    
T  43251417 aagataaagagtcaaaagatcatatttcccttatgttagagggtcaaaagagtacattttcctaaa 43251352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 3403214 - 3403266
Alignment:
Q  49 tcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttcccta 101  Q
    |||||||||||||||||| | | ||||| | ||||||||||||||||| ||||    
T  3403214 tcaaaagatcatatttcccttatgttagggggtcaaaagagcatattttccta 3403266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 6285325 - 6285429
Alignment:
Q  3 gtaaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaa 102  Q
    |||||||||||||| ||| | ||||||| |||||||| |||||||||||||||| ||||||| ||| ||||||||| |||||||||||||||||  ||||    
T  6285325 gtaaagataaatggtcaatagagcttatatccctaaatatagagggtcaaaagagcatattttcataaagttagagggtcaaaagagcatatttttctaa 6285424  T
Q  103 agata 107  Q
    |||||    
T  6285425 agata 6285429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 28552466 - 28552570
Alignment:
Q  3 gtaaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaa 102  Q
    |||||||| || || ||||| |||||||||||||||||||||||||| |||||| ||||||| ||| ||||||||  |||||||||||||||||  ||||    
T  28552466 gtaaagattaagggtcaaaagagcttatttccctaaagatagagggttaaaagagcatattttcataaagttagaaggtcaaaagagcatatttttctaa 28552565  T
Q  103 agata 107  Q
    |||||    
T  28552566 agata 28552570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 14366491 - 14366386
Alignment:
Q  3 gtaaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaa 102  Q
    |||||||| || ||| |||| | ||||||||| ||||||||||||| ||| | ||||||||| | | |||||||||||||||||||||||||| ||||||    
T  14366491 gtaaagatgaagggcaaaaagatcttatttccttaaagatagaggggcaacaaatcatattttcctaaagttagagtgtcaaaagagcatattcccctaa 14366392  T
Q  103 agataa 108  Q
    ||||||    
T  14366391 agataa 14366386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 39386573 - 39386494
Alignment:
Q  24 agcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaa 103  Q
    |||||||||  |||||||| ||||||||||| ||||||||||  | ||||||||| ||||||||||||||||||||||||    
T  39386573 agcttatttgtctaaagatggagggtcaaaatatcatatttctgtaaagttagagggtcaaaagagcatatttccctaaa 39386494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 34500482 - 34500404
Alignment:
Q  29 atttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaagata 107  Q
    |||| |||||||||||||| |||||||||||||||||  | ||||||||| || |||||||||||||||||||| ||||    
T  34500482 atttgcctaaagatagaggatcaaaagatcatatttcactaaagttagagggttaaaagagcatatttccctaatgata 34500404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 36486344 - 36486446
Alignment:
Q  3 gtaaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaa 102  Q
    ||||||||||| || |||||  ||||||||  |||||||| ||||||||||| |  |||||| ||  ||||||||  ||||||||||||||||||| |||    
T  36486344 gtaaagataaagggtcaaaagtgcttatttatctaaagatcgagggtcaaaaaaatatattttcacaaagttagacagtcaaaagagcatatttccttaa 36486443  T
Q  103 aga 105  Q
    |||    
T  36486444 aga 36486446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 21148123 - 21148066
Alignment:
Q  46 gggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaa 103  Q
    ||||||||||||||||||||| | | ||||| | ||||||||||||||||||||||||    
T  21148123 gggtcaaaagatcatatttcccttatgttagggggtcaaaagagcatatttccctaaa 21148066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 16551803 - 16551860
Alignment:
Q  46 gggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaa 103  Q
    |||||||||||||||||||   ||| ||||| | ||||||||||||||||||||||||    
T  16551803 gggtcaaaagatcatatttgtctgatgttagggggtcaaaagagcatatttccctaaa 16551860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 22786174 - 22786118
Alignment:
Q  46 gggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaa 103  Q
    ||||||||||||||||||||  | | |||||| |||||||||||||||||||||||||    
T  22786174 gggtcaaaagatcatatttcacttatgttaga-tgtcaaaagagcatatttccctaaa 22786118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 29182160 - 29182223
Alignment:
Q  46 gggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaagataagg 110  Q
    ||||||||||||||||||||| | | ||||| | |||||||||||||||||| ||||| ||||||    
T  29182160 gggtcaaaagatcatatttcccttatgttaggg-gtcaaaagagcatatttctctaaacataagg 29182223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 10341223 - 10341143
Alignment:
Q  28 tatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaagataa 108  Q
    ||||||| |||| ||| ||||||||||||| |||||||| | ||| | ||| | ||||| || ||||||||||||| ||||    
T  10341223 tatttccataaacataaagggtcaaaagatgatatttccctaaagatggagggccaaaatagtatatttccctaaaaataa 10341143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 28552363 - 28552308
Alignment:
Q  130 aataggagaccaaaatcgtaacattttgaaacttagagg--gaaaaatgcacttta 183  Q
    |||||| ||||||||||| ||||||||||||||||| ||  ||||| |||||||||    
T  28552363 aataggggaccaaaatcgcaacattttgaaacttagggggcgaaaagtgcacttta 28552308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 16291830 - 16291934
Alignment:
Q  3 gtaaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaa 102  Q
    ||||||||||  || ||||| | |||||||||||||||||||||||  |||||| ||||||||| | ||||||||| ||||||||||||||||||||| |    
T  16291830 gtaaagataaggggacaaaagatcttatttccctaaagatagagggctaaaagagcatatttccctaaagttagagggtcaaaagagcatatttccctga 16291929  T
Q  103 agata 107  Q
    |||||    
T  16291930 agata 16291934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 5932229 - 5932306
Alignment:
Q  30 tttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaagataa 108  Q
    ||||| |||||||||| |||||||||| | ||||||  |||||||| || ||||||||||||||||| |||||||||||    
T  5932229 tttccttaaagatagatggtcaaaagaacttatttctctgaagttaaag-gtcaaaagagcatatttacctaaagataa 5932306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 16291863 - 16291937
Alignment:
Q  4 taaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagag 78  Q
    |||||||| | ||| |||| ||| ||||||||||||| ||||||||||||||| ||||||||| ||||| |||||    
T  16291863 taaagatagagggctaaaagagcatatttccctaaagttagagggtcaaaagagcatatttccctgaagatagag 16291937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 16588539 - 16588641
Alignment:
Q  5 aaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaag 104  Q
    ||||||||| |||||||||| |||||||   ||||||||||||| |||||   |||||| || | ||||| ||| ||||||||||||||||| | |||||    
T  16588539 aaagataaagggccaaaatatcttattttattaaagatagagggccaaaatcgcatattaccctaaagttggagggtcaaaagagcatattttcttaaag 16588638  T
Q  105 ata 107  Q
    |||    
T  16588639 ata 16588641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 55265059 - 55264967
Alignment:
Q  3 gtaaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatattt 96  Q
    |||||||||||  | | ||||| |||||||||||||||||| ||||| |||| | ||||||| | | ||||||||| |||||||||||||||||    
T  55265059 gtaaagataaagagtcgaaatatcttatttccctaaagataaagggt-aaaaaaacatattttcctaaagttagagggtcaaaagagcatattt 55264967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 14857486 - 14857424
Alignment:
Q  3 gtaaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttc 65  Q
    ||||||||||| || ||||| |||||||||| ||||||||||||||| |||||| | ||||||    
T  14857486 gtaaagataaagggtcaaaagagcttatttctctaaagatagagggttaaaagagcttatttc 14857424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 4098801 - 4098748
Alignment:
Q  46 gggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccc 99  Q
    ||||||||||||||||||||| | | ||||| | ||||||||||||||||||||    
T  4098801 gggtcaaaagatcatatttcccttatgttagggggtcaaaagagcatatttccc 4098748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 9397346 - 9397281
Alignment:
Q  36 taaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttcccta 101  Q
    |||||||| ||||| |||| | ||||||||| | | ||||||| ||||||||||||||||||||||    
T  9397346 taaagataaagggttaaaaaaacatatttcctttatgttagagggtcaaaagagcatatttcccta 9397281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 51291329 - 51291386
Alignment:
Q  46 gggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaa 103  Q
    ||||||||||||||||||||| | | ||||| | ||||||||| ||||||||||||||    
T  51291329 gggtcaaaagatcatatttcccttatgttagggggtcaaaagaacatatttccctaaa 51291386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 12101275 - 12101379
Alignment:
Q  3 gtaaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaa 102  Q
    ||||||||||  ||| |||| | ||||||| |||||||||||||   ||||  | ||||||||  | ||||||||| ||||||| |||||||||| ||||    
T  12101275 gtaaagataacaggctaaaagaacttattttcctaaagatagagtaccaaagaagcatatttctctaaagttagagggtcaaaaaagcatatttctctaa 12101374  T
Q  103 agata 107  Q
    |||||    
T  12101375 agata 12101379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 43336145 - 43336181
Alignment:
Q  28 tatttccctaaagatagagggtcaaaagatcatattt 64  Q
    ||||||||||||| |||||||||||||||||||||||    
T  43336145 tatttccctaaagttagagggtcaaaagatcatattt 43336181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 24626382 - 24626437
Alignment:
Q  48 gtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaa 103  Q
    ||||||||||||||||||| | | ||||  | ||||||||||||||||||||||||    
T  24626382 gtcaaaagatcatatttcccttatgttattgagtcaaaagagcatatttccctaaa 24626437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 13764363 - 13764290
Alignment:
Q  35 ctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaagataa 108  Q
    ||||||||||||| | |||||| ||||||| |||  || || || ||||| |||||| ||||||||||||||||    
T  13764363 ctaaagatagaggtttaaaagaacatattttcatatagatatagggtcaatagagcacatttccctaaagataa 13764290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 16588570 - 16588630
Alignment:
Q  4 taaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatattt 64  Q
    |||||||| | ||||||||| || |||| |||||||| | ||||||||||||| |||||||    
T  16588570 taaagatagagggccaaaatcgcatattaccctaaagttggagggtcaaaagagcatattt 16588630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 16964716 - 16964656
Alignment:
Q  4 taaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatattt 64  Q
    ||||||||||||||||||||||| |||||  |||||| |||||| | |||| | |||||||    
T  16964716 taaagataaatggccaaaatagcatatttttctaaagttagaggataaaaaaagcatattt 16964656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 43336090 - 43336157
Alignment:
Q  36 taaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaag 104  Q
    |||||||| |||||||||  ||| ||||||||| ||| ||||  ||||||||| |||||||||||||||    
T  43336090 taaagataaagggtcaaac-atcttatttccataaagatagaaggtcaaaagaacatatttccctaaag 43336157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 53097351 - 53097271
Alignment:
Q  26 cttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaagat 106  Q
    ||||||| ||||||||||||||  ||||| | ||||||||  | ||||| ||| ||| ||||||||||||| | |||||||    
T  53097351 cttattttcctaaagatagaggaccaaaatagcatatttcgctaaagttggagggtcgaaagagcatattttcataaagat 53097271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 2053331 - 2053234
Alignment:
Q  4 taaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttcccta 101  Q
    ||||| |||| || ||||| |||||||||| ||||||||||||||| |||||| ||||||||||| ||||||||   |||||||||||||||||||||    
T  2053331 taaaggtaaagggtcaaaagagcttatttctctaaagatagagggttaaaagagcatatttccataaagttagatgatcaaaagagcatatttcccta 2053234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 39910213 - 39910291
Alignment:
Q  29 atttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaagata 107  Q
    |||| |||||||||||||| |||||||||||||||||  | ||||||||| || |||||||||||||||||||| ||||    
T  39910213 atttgcctaaagatagaggatcaaaagatcatatttcactaaagttagagggttaaaagagcatatttccctaatgata 39910291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 13190850 - 13190789
Alignment:
Q  3 gtaaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatattt 64  Q
    ||||||||||||| |||||||| ||||||| | |||||||||||||| |||||| |||||||    
T  13190850 gtaaagataaatgaccaaaatatcttattttcttaaagatagagggtgaaaagagcatattt 13190789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 22845766 - 22845721
Alignment:
Q  18 caaaatagcttatttccctaaagatagagggtcaaaagatcatatt 63  Q
    ||||| |||||||||  |||||||||||||||||||||| ||||||    
T  22845766 caaaagagcttatttttctaaagatagagggtcaaaagaacatatt 22845721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 15869490 - 15869560
Alignment:
Q  38 aagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaagataagg 110  Q
    |||| ||| |||||||||||||||||||  | | ||||||| |||||||||||||||||| ||||| ||||||    
T  15869490 aagacagatggtcaaaagatcatatttctctta-gttagag-gtcaaaagagcatatttctctaaacataagg 15869560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 38630113 - 38630054
Alignment:
Q  130 aataggagaccaaaatcgtaacattttgaaacttagagg--gaaaaatgcactttaacct 187  Q
    |||||| || |||||||| ||||||||||||||||||||  |||||||| | ||||||||    
T  38630113 aataggggatcaaaatcgcaacattttgaaacttagagggcgaaaaatgaagtttaacct 38630054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 32677992 - 32678166
Alignment:
Q  18 caaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaagata-aggacagaa 116  Q
    ||||| ||| ||||||||||||| || || || |||||| ||||||||||| ||||||||| ||||||||||||||||||| | |||||| ||| || |     
T  32677992 caaaagagcgtatttccctaaaggtatagagttaaaagagcatatttccataaagttagagggtcaaaagagcatatttccttgaagatagagggcaaat 32678091  T
Q  117 ttttcannnnnnnaataggagaccaaaatcgtaacattttgaaacttagagg--gaaaaatgcactttaaccttt 189  Q
    |||| |       |||| ||||| |||||||||||||||| |||||||| ||  |||||||| |||||| |||||    
T  32678092 tttttatttttttaataagagactaaaatcgtaacattttaaaacttaggggaagaaaaatgtactttagccttt 32678166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 13645965 - 13646054
Alignment:
Q  18 caaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaagata 107  Q
    ||||| ||||||||| |||||||||||||||| |||||| ||||||| |||  |||||||| ||||||| ||||||||||| ||||||||    
T  13645965 caaaagagcttattttcctaaagatagagggttaaaagagcatatttacatacagttagagggtcaaaacagcatatttccgtaaagata 13646054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 2123530 - 2123447
Alignment:
Q  3 gtaaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaa 86  Q
    ||||||||||| || ||||| | |||||||||||||||||||||| |||||||| |||||||| || || |||||| |||||||    
T  2123530 gtaaagataaagggtcaaaagaacttatttccctaaagatagaggatcaaaagagcatatttctataaacttagagggtcaaaa 2123447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 36199600 - 36199507
Alignment:
Q  3 gtaaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatattt 96  Q
    ||||||||||| ||  ||||| |||||||| ||||||||||||| ||||||| | ||||||| ||| |||||| |  |||||||||||||||||    
T  36199600 gtaaagataaagggttaaaattgcttattttcctaaagatagagtgtcaaaaaagcatattttcataaagttaaatggtcaaaagagcatattt 36199507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 33199608 - 33199546
Alignment:
Q  3 gtaaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttc 65  Q
    ||||||||||| |||||||| ||| ||||||||||||| |||| |||||||||| ||||||||    
T  33199608 gtaaagataaaaggccaaaagagcatatttccctaaagttagaaggtcaaaagagcatatttc 33199546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 331854 - 331800
Alignment:
Q  49 tcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaa 103  Q
    |||||| | ||||||||| | ||||||||| ||||||||||||||||||||||||    
T  331854 tcaaaaaagcatatttcccttaagttagagggtcaaaagagcatatttccctaaa 331800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 2190687 - 2190620
Alignment:
Q  36 taaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaa 103  Q
    ||||||||  ||| |||| || ||||||| | | ||||||||| ||||||||||||||||||||||||    
T  2190687 taaagataaggggccaaacgagcatattttccttaagttagagggtcaaaagagcatatttccctaaa 2190620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 169
Target Start/End: Original strand, 6763963 - 6764002
Alignment:
Q  130 aataggagaccaaaatcgtaacattttgaaacttagaggg 169  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  6763963 aataggggaccaaaatcgcaacattttgaaacttagaggg 6764002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 169
Target Start/End: Complemental strand, 15735122 - 15735083
Alignment:
Q  130 aataggagaccaaaatcgtaacattttgaaacttagaggg 169  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  15735122 aataggggaccaaaatcgcaacattttgaaacttagaggg 15735083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 2123529 - 2123468
Alignment:
Q  36 taaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttc 97  Q
    |||||||| |||||||||||| | ||||||| | ||| |||||  |||||||||||||||||    
T  2123529 taaagataaagggtcaaaagaacttatttccctaaagatagaggatcaaaagagcatatttc 2123468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 33199607 - 33199546
Alignment:
Q  36 taaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttc 97  Q
    |||||||| | || ||||||| ||||||||| | ||||||||  ||||||||||||||||||    
T  33199607 taaagataaaaggccaaaagagcatatttccctaaagttagaaggtcaaaagagcatatttc 33199546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 331853 - 331805
Alignment:
Q  18 caaaatagcttatttccctaaagatagagggtcaaaagatcatatttcc 66  Q
    ||||| ||| ||||||||| ||| ||||||||||||||| |||||||||    
T  331853 caaaaaagcatatttcccttaagttagagggtcaaaagagcatatttcc 331805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 35946 - 35849
Alignment:
Q  24 agcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaagata-aggacagaatttt 120  Q
    ||||||||| |||||||||| ||| | ||||||  |||||||||| |||||||||  ||||||||||||||||| ||||||||| |||||| ||||||    
T  35946 agcttattttcctaaagataaaggattaaaagagtatatttccataaagttagaggatcaaaagagcatatttctctaaagatagaggacacaatttt 35849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 34192228 - 34192332
Alignment:
Q  3 gtaaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaa 102  Q
    ||||||||||| ||| |||||| ||||||| ||||||||||||||| |||||    || ||||| | ||||| ||| ||||||| ||||||||||| |||    
T  34192228 gtaaagataaagggctaaaatatcttattttcctaaagatagagggccaaaattgtatttttccctaaagtttgagggtcaaaaaagcatatttccataa 34192327  T
Q  103 agata 107  Q
    |||||    
T  34192328 agata 34192332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 29365446 - 29365342
Alignment:
Q  3 gtaaagataaatggccaaaatagcttatttccctaaagatagagggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaa 102  Q
    ||||||||||| |||||||| |||||||||| | ||| ||| |||||||||| |   ||||||| | || |||| |  ||||||||||| ||||||||||    
T  29365446 gtaaagataaagggccaaaagagcttatttctcaaaatataaagggtcaaaaaagtgtatttccctaaaattaggggatcaaaagagcacatttccctaa 29365347  T
Q  103 agata 107  Q
    |||||    
T  29365346 agata 29365342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 12193588 - 12193542
Alignment:
Q  18 caaaatagcttatttccctaaagatagagggtcaaaagatcatattt 64  Q
    ||||||||| ||||||||||||||||||||| ||||||| |||||||    
T  12193588 caaaatagcatatttccctaaagatagagggacaaaagaacatattt 12193542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 4013826 - 4013883
Alignment:
Q  46 gggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaa 103  Q
    ||||||||||||||||||||| | |  |||| | ||||||||||||||||||||||||    
T  4013826 gggtcaaaagatcatatttcccttatattagggggtcaaaagagcatatttccctaaa 4013883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 15298739 - 15298789
Alignment:
Q  139 ccaaaatcgtaacattttgaaacttagagg--gaaaaatgcactttaacct 187  Q
    ||||||||| ||||||||||||| ||||||  |||||||||||||||||||    
T  15298739 ccaaaatcgcaacattttgaaacatagagggcgaaaaatgcactttaacct 15298789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 9620562 - 9620513
Alignment:
Q  15 ggccaaaatagcttatttccctaaagatagagggtcaaaagatcatattt 64  Q
    |||||||| |||||||||| ||||||||||||  |||||||| |||||||    
T  9620562 ggccaaaagagcttatttctctaaagatagagaatcaaaagagcatattt 9620513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 455075 - 455018
Alignment:
Q  46 gggtcaaaagatcatatttccatgaagttagagtgtcaaaagagcatatttccctaaa 103  Q
    ||||||||||||| ||||||| | | ||||| | || |||||||||||||||||||||    
T  455075 gggtcaaaagatcgtatttcctttatgttagggggttaaaagagcatatttccctaaa 455018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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