View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5905_low_39 (Length: 206)

Name: NF5905_low_39
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5905_low_39
NF5905_low_39
[»] chr6 (26 HSPs)
chr6 (25-206)||(5398179-5398360)
chr6 (48-206)||(5156017-5156175)
chr6 (48-206)||(5100822-5100980)
chr6 (48-206)||(5372230-5372388)
chr6 (44-205)||(5177873-5178034)
chr6 (44-205)||(5279698-5279859)
chr6 (44-205)||(5688903-5689064)
chr6 (48-206)||(5135923-5136081)
chr6 (44-206)||(2939044-2939210)
chr6 (44-206)||(5098344-5098506)
chr6 (44-202)||(5180774-5180932)
chr6 (44-206)||(5351533-5351695)
chr6 (44-206)||(5242512-5242674)
chr6 (44-204)||(5065449-5065609)
chr6 (44-206)||(5439144-5439306)
chr6 (44-206)||(5427033-5427195)
chr6 (44-202)||(23127310-23127468)
chr6 (44-206)||(5126629-5126791)
chr6 (44-202)||(5346166-5346324)
chr6 (44-202)||(5352863-5353021)
chr6 (44-202)||(5448746-5448904)
chr6 (54-205)||(5072692-5072843)
chr6 (67-206)||(5334311-5334457)
chr6 (44-146)||(5283224-5283326)
chr6 (44-146)||(5256114-5256216)
chr6 (44-202)||(5124443-5124601)
[»] chr3 (4 HSPs)
chr3 (44-205)||(47985393-47985554)
chr3 (44-205)||(48003967-48004128)
chr3 (44-205)||(47994680-47994841)
chr3 (44-205)||(48013252-48013413)
[»] chr7 (1 HSPs)
chr7 (65-202)||(36212942-36213079)
[»] chr4 (3 HSPs)
chr4 (89-204)||(25568975-25569090)
chr4 (44-202)||(4132618-4132773)
chr4 (152-204)||(4319410-4319462)


Alignment Details
Target: chr6 (Bit Score: 114; Significance: 5e-58; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 25 - 206
Target Start/End: Complemental strand, 5398360 - 5398179
Alignment:
Q  25 tacaagcaattgcattcaaatcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccagg 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||   |||||| ||||||||||||||    
T  5398360 tacaagcaattgcattcaaatcatatacaagataaactgttgtcttcttcacaatgaaatcattctcgaaaacaaagacaacctcaactttgttaccagg 5398261  T
Q  125 ttttagacttgatactaccctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggcc 206  Q
    || || |||||||||||||||  |  |||| |||| ||||||||||| ||| ||||||||||||||||||||||||||||||    
T  5398260 ttctatacttgatactaccctttgcccctcttcatgttcaaaggagaataacgcctcactcttatagagctgaatggtggcc 5398179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 48 - 206
Target Start/End: Original strand, 5156017 - 5156175
Alignment:
Q  48 tatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactaccctca 147  Q
    ||||||||||||||||||||||||||||||| |||||   |||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||     
T  5156017 tatacaagataaactgttgtcttcttcacaatgaaattaatctcgaaaacaaaatggacctccactttgttaccaggttctagacttgatactaccctct 5156116  T
Q  148 gagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggcc 206  Q
    |  |||| ||||||||||||||| | ||||||||||||||||| |||||||||||||||    
T  5156117 gcccctcttcatcttcaaaggaggccaatgcctcactcttataaagctgaatggtggcc 5156175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 48 - 206
Target Start/End: Original strand, 5100822 - 5100980
Alignment:
Q  48 tatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactaccctca 147  Q
    ||||| |||||||||| |||||| ||||||| ||||   ||||||||||||| |   ||||||||||||||||| |||| || |||||||||||||||||    
T  5100822 tatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgatactaccctca 5100921  T
Q  148 gagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggcc 206  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5100922 gagcctcctcatcttcaaaggagactaatgcctcgctcttatagagctgaatggtggcc 5100980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 48 - 206
Target Start/End: Complemental strand, 5372388 - 5372230
Alignment:
Q  48 tatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactaccctca 147  Q
    ||||| ||||||| ||||||||||||||||| |||||| ||||| | ||||||||| | |||||||||||||||||||| |||||||||||||||||||     
T  5372388 tatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggatctccactttgttaccaggttctagacttgatactaccctct 5372289  T
Q  148 gagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggcc 206  Q
    |  |||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  5372288 gcccctcttcatcttcaaaggagactaatgcttcactcttataaagctgaatggtggcc 5372230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 44 - 205
Target Start/End: Complemental strand, 5178034 - 5177873
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||| |||||||||||||| |||||||||| |||| | ||||||||||||| |  ||||||||||||||||| ||||| || ||||||||||||     
T  5178034 atcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactact 5177935  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggc 205  Q
    ||| || |||| ||||||||||||||| |||||||||| |||||||| ||||||||||||||    
T  5177934 ctctgaccctcttcatcttcaaaggaggctaatgcctctctcttataaagctgaatggtggc 5177873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 44 - 205
Target Start/End: Complemental strand, 5279859 - 5279698
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||| |||||||||||||| |||||||||| |||| | ||||||||||||| |  ||||||||||||||||| ||||| || ||||||||||||     
T  5279859 atcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactact 5279760  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggc 205  Q
    ||| || |||| ||||||||||||||| |||||||||| |||||||| ||||||||||||||    
T  5279759 ctctgaccctcttcatcttcaaaggaggctaatgcctctctcttataaagctgaatggtggc 5279698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 44 - 205
Target Start/End: Original strand, 5688903 - 5689064
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||| |||||||||||||| |||||||||| |||| | |||||||||||| ||  ||||||||||||||||| ||||| || ||||||||||||     
T  5688903 atcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 5689002  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggc 205  Q
    ||| |  |||| |||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  5689003 ctctgtccctcttcatcttcaaaggagactaatgcctcgctcttataaagctgaatggtggc 5689064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 48 - 206
Target Start/End: Original strand, 5135923 - 5136081
Alignment:
Q  48 tatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactaccctca 147  Q
    ||||| |||||||||| |||||| ||||||| ||||   ||||||||||||| |   ||||||||||||||||| |||| || |||||||||||||||||    
T  5135923 tatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgatactaccctca 5136022  T
Q  148 gagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggcc 206  Q
    ||||||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||    
T  5136023 gagcctcctcatcttcaaaggaggctaatgcttcgctcttgtagagctgaatggtggcc 5136081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 44 - 206
Target Start/End: Complemental strand, 2939210 - 2939044
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||| ||||||| ||||| ||||||||||| | |||| ||||| | ||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  2939210 atcatatacgagataaattgttgccttcttcacaatgcaatcattctcgataacaaaatggacctccactttgttaccaggttatagacttgatactacc 2939111  T
Q  144 ctcagagcctcct----catcttcaaaggagactaatgcctcactcttatagagctgaatggtggcc 206  Q
    ||| |  | || |    ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2939110 ctctgcccttcttcatccatcttcgaaggagactaatgcctcactcttatagagctgaatggtggcc 2939044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 44 - 206
Target Start/End: Complemental strand, 5098506 - 5098344
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaa-aatgaacctccactttgttaccaggttttagacttgatactac 142  Q
    ||||||||| |||||||||| |||||| ||||||| ||||   ||||| ||||||| ||||| ||||||||||||||||||||| || |||||||| |||    
T  5098506 atcatataccagataaactgctgtctttttcacaatgaaactgttctcgaaaacaacaatga-cctccactttgttaccaggttctatacttgatattac 5098408  T
Q  143 cctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggcc 206  Q
    |||| |   ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5098407 cctctggctctcctcatcttcaaaggagaccaatgcctcactcttatagagctgaatggtggcc 5098344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 5180774 - 5180932
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||| ||||||| || |||||||||||||| ||||  ||||||||||||||||   ||||||||||||||||| |||| ||  ||||||||||||    
T  5180774 atcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactacc 5180873  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggt 202  Q
    ||| || |||| ||||||||||| |||||||| |  |||||||||||||||||||||||    
T  5180874 ctctgaccctcttcatcttcaaaagagactaacgtatcactcttatagagctgaatggt 5180932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 44 - 206
Target Start/End: Complemental strand, 5351695 - 5351533
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||| |||||||||  |||||| ||||||| | |||| ||||| |||||||||   ||||||||||||||||  |||| || ||||||||||| |    
T  5351695 atcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaatgacctccactttgttactgggttctatacttgatactaac 5351596  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggcc 206  Q
    ||| |  ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  5351595 ctctgcccctcctcatcttcaaaggaaactaatgcctcactcttatagagccgaatggtggcc 5351533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 206
Target Start/End: Original strand, 5242512 - 5242674
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||| |||||||||  |||||||||||||| ||||   |||||||||||||||   |||||||||||||||||||||| || |||| |||||||     
T  5242512 atcatatacgagataaactactgtcttcttcacaatgaaactgttctcaaaaacaaaaacgacctccactttgttaccaggttctatacttcatactact 5242611  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggcc 206  Q
    |||||  ||| |||||||||||||| | ||| |||||| ||||| ||||||||||||||||||    
T  5242612 ctcagccccttctcatcttcaaaggcggctactgcctctctcttgtagagctgaatggtggcc 5242674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 204
Target Start/End: Original strand, 5065449 - 5065609
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||  ||||||||||||||| |||||||||||||| | ||||||||||||| |  ||  |||||||| || |||||||  | ||||||||||||     
T  5065449 atcatatatgagataaactgttgtcctcttcacaacgaaaccgttctcaaaaacaacaacaaaatccactttatttccaggttcaatacttgatactact 5065548  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtgg 204  Q
    ||| |  ||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||    
T  5065549 ctctgcccctcctcatcttcaaaggagattaacgcctctctcttatagagctgaatggtgg 5065609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 44 - 206
Target Start/End: Complemental strand, 5439306 - 5439144
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||| |||||| ||| |||||| ||  ||| |||||| ||||  |||||||||  ||||||||||||||||||||||| || |||||||  || |    
T  5439306 atcatatacgagataagctgctgtctttttggcaatgaaatcattcttgaaaacaaaaacaacctccactttgttaccaggttctatacttgattttaac 5439207  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggcc 206  Q
    ||| |  |||||||||||||||| |||||||  ||||||||||||||||||||||||||||||    
T  5439206 ctctgcccctcctcatcttcaaaagagactacagcctcactcttatagagctgaatggtggcc 5439144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 44 - 206
Target Start/End: Complemental strand, 5427195 - 5427033
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||| |||||||||  ||||||| |||||||||||   |||||||||||||||   ||||||| |||||||||||||| || ||||||||||||     
T  5427195 atcatatacgagataaactactgtcttcgtcacaacgaaactgttctcaaaaacaaaaacgacctccattttgttaccaggttctatacttgatactact 5427096  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggcc 206  Q
    ||     |||||||||||||||| || |||||| ||||||||||||| ||||||||| |||||    
T  5427095 ctttccccctcctcatcttcaaatgacactaatacctcactcttataaagctgaatgatggcc 5427033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 23127310 - 23127468
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    |||||||||||||||||||||||| ||||||||||||||| | ||||||||||| | |  |||||||| |||||||||||||| |  |||||||||||      
T  23127310 atcatatacaagataaactgttgtattcttcacaacgaaaccattctcaaaaacgacaacaacctccattttgttaccaggttctgcacttgatactaag 23127409  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggt 202  Q
    |||    | ||||||||||| || |||||||||| ||| |||||||||| |||||||||    
T  23127410 ctcttcccttcctcatcttcgaacgagactaatgtctctctcttatagatctgaatggt 23127468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 44 - 206
Target Start/End: Original strand, 5126629 - 5126791
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||  |||||||| | |||||||||||||| |||| | |||| |||||||| |  || ||| ||||||||||||| || || ||||||||||||     
T  5126629 atcatatatgagataaacagctgtcttcttcacaatgaaaccgttcttaaaaacaacaacaatctcaactttgttaccagcttctatacttgatactact 5126728  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggcc 206  Q
    |||    |||||||||||||||||||||||  |||||| ||||||||||| ||||||||||||    
T  5126729 ctctccccctcctcatcttcaaaggagactgctgcctctctcttatagagttgaatggtggcc 5126791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 5346324 - 5346166
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||  ||||||| || |||||||||||||| |||| | ||||||| |||||    ||||||||||||||||||||||| || ||||||||| ||     
T  5346324 atcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgatacaact 5346225  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggt 202  Q
    ||| |  |||||||||||||||||| | ||| |||||| ||||| || |||||||||||    
T  5346224 ctctggccctcctcatcttcaaaggcggctactgcctctctcttgtatagctgaatggt 5346166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 5352863 - 5353021
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||| ||||||| ||||||||||||||| | ||||   ||||| ||||||| |   ||||| ||||||| |||||| |  | ||||||||||||     
T  5352863 atcatataccagataaattgttgtcttcttcacgatgaaacaattctcgaaaacaataaccacctctactttgtcaccaggatccatacttgatactact 5352962  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggt 202  Q
    ||| |  ||||||||||||||||||| | ||||||||| |||||||| |||||||||||    
T  5352963 ctctgcccctcctcatcttcaaaggaaattaatgcctctctcttataaagctgaatggt 5353021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 5448904 - 5448746
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||| ||||| |||  |||||||| ||||  |||||| ||||| |||||||||   | |||||||||||| || |||| || ||||||||||| |    
T  5448904 atcatataccagatatactactgtcttctccacagtgaaatcattctcgaaaacaaaaacgatctccactttgtttccgggttctatacttgatactaac 5448805  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggt 202  Q
    ||| |  |||||| |||||||||||| ||||||| ||||||||||||||  ||||||||    
T  5448804 ctctgcccctccttatcttcaaaggaaactaatgtctcactcttatagatttgaatggt 5448746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 205
Target Start/End: Original strand, 5072692 - 5072843
Alignment:
Q  54 agataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactaccctcagagcct 153  Q
    ||||||| | ||||||| ||||||| |||||| ||||||| |||||    ||||||||||| ||||||||| | || |||||||||||  |||    |||    
T  5072692 agataaattattgtctttttcacaatgaaatcgttctcaacaacaacgacaacctccacttggttaccaggctctatacttgatactaatctctcgccct 5072791  T
Q  154 cctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggc 205  Q
    | |||||||  ||||||||||||||||| |||||||| || |||||||||||    
T  5072792 catcatctttgaaggagactaatgcctctctcttatatagttgaatggtggc 5072843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 67 - 206
Target Start/End: Complemental strand, 5334457 - 5334311
Alignment:
Q  67 tcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactaccctcagagcctcctcatcttcaa- 165  Q
    ||||||||| || |||||| ||||| |||||||||   |||||||||||||||||||||| ||||| |||||||||||||    |||| |||||||  |     
T  5334457 tcttcttcaaaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaa 5334358  T
Q  166 ------aggagactaatgcctcactcttatagagctgaatggtggcc 206  Q
          || || |||||||||||||||||||||| ||||||||||||    
T  5334357 gaagttagaagtctaatgcctcactcttatagagttgaatggtggcc 5334311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 146
Target Start/End: Original strand, 5283224 - 5283326
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaa-atgaacctccactttgttaccaggttttagacttgatactac 142  Q
    ||||||||| ||||||| || |||||||||||||| ||||   || ||||||||||| ||| ||||||||||||||||| ||||  | |||||||| |||    
T  5283224 atcatataccagataaattgctgtcttcttcacaatgaaactgttttcaaaaacaaatatg-acctccactttgttacctggttcgatacttgatattac 5283322  T
Q  143 cctc 146  Q
    ||||    
T  5283323 cctc 5283326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 44 - 146
Target Start/End: Original strand, 5256114 - 5256216
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||| | ||||| || |||||||||||||| |||||| ||||  ||||||||    ||||||||||||||||| ||||  | |||||||| ||||    
T  5256114 atcatataccaaataaattgctgtcttcttcacaatgaaatcattcttgaaaacaaatacgacctccactttgttacctggttcaatacttgatattacc 5256213  T
Q  144 ctc 146  Q
    |||    
T  5256214 ctc 5256216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 5124443 - 5124601
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    |||||||| || ||| | |||||||| |||||||| |||    |||| ||||||||||  ||  |||||||| |||||||||| || ||| |||||||      
T  5124443 atcatatataatatacattgttgtctccttcacaatgaagcggttcttaaaaacaaaaacaaattccactttattaccaggttctatactcgatactaat 5124542  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggt 202  Q
    ||  |  ||||||| |||| ||| | ||||||||| || ||||||||||| ||||||||    
T  5124543 ctatgcccctcctcctcttgaaatgcgactaatgcatctctcttatagagttgaatggt 5124601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 9e-32; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 44 - 205
Target Start/End: Original strand, 47985393 - 47985554
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    |||||||||||||||||||| | || ||||||||| |||| | ||||||||||||| |   ||||||||||||||||| |||| || ||||||||||||     
T  47985393 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact 47985492  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggc 205  Q
    |||    ||||||||||| ||||||||| ||||| ||||||||||||||| |||||| ||||    
T  47985493 ctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaatgatggc 47985554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 44 - 205
Target Start/End: Original strand, 48003967 - 48004128
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    |||||||||||||||||||| | || ||||||||| |||| | ||||||||||||| |   ||||||||||||||||| |||| || ||||||||||||     
T  48003967 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact 48004066  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggc 205  Q
    |||    ||||||||||| ||||||||| ||||| ||||||||||||||| |||||| ||||    
T  48004067 ctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaatgatggc 48004128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 44 - 205
Target Start/End: Original strand, 47994680 - 47994841
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    |||||||||||||||||||| | || ||||||||| |||| | ||||||||||||| |   ||||||||||||||||| | || || ||||||||||||     
T  47994680 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact 47994779  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggc 205  Q
    |||    ||||||||||| ||||||||| ||||| ||||||||||||||| |||||| ||||    
T  47994780 ctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaatgatggc 47994841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 44 - 205
Target Start/End: Original strand, 48013252 - 48013413
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    |||||||||||||||||||| | || ||||||||| |||| | ||||||||||||| |   ||||||||||||||||| | || || ||||||||||||     
T  48013252 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact 48013351  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtggc 205  Q
    |||    ||||||||||| ||||||||| ||||| ||||||||||||||| |||||| ||||    
T  48013352 ctctccccctcctcatctccaaaggagattaatgtctcactcttatagagttgaatgatggc 48013413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 65 - 202
Target Start/End: Original strand, 36212942 - 36213079
Alignment:
Q  65 tgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactaccctcagagcctcctcatcttca 164  Q
    |||||||||||||| |||||  ||||||||||||| |  |||||||| ||| | |||||||| || |||||||||||  ||| |  ||||||||||||||    
T  36212942 tgtcttcttcacaatgaaattgttctcaaaaacaacaacaacctccattttatcaccaggttctatacttgatactaatctctgcccctcctcatcttca 36213041  T
Q  165 aaggagactaatgcctcactcttatagagctgaatggt 202  Q
    || |||||||||||||| |||||||||| |||||||||    
T  36213042 aatgagactaatgcctctctcttatagatctgaatggt 36213079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 25569090 - 25568975
Alignment:
Q  89 ctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactaccctcagagcctcctcatcttcaaaggagactaatgcctcactctta 188  Q
    |||||||||||||  ||||||||||||||| ||||||| || ||||||||||||  |  |  ||||||| | ||||||||| ||||||||||| |||||     
T  25569090 ctcaaaaacaaaaacaacctccactttgtttccaggttctatacttgatactactatatgcccctcctcgttttcaaaggaaactaatgcctctctcttg 25568991  T
Q  189 tagagctgaatggtgg 204  Q
    |||| |||||||||||    
T  25568990 tagacctgaatggtgg 25568975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 4132618 - 4132773
Alignment:
Q  44 atcatatacaagataaactgttgtcttcttcacaacgaaatctttctcaaaaacaaaatgaacctccactttgttaccaggttttagacttgatactacc 143  Q
    ||||||||  |||||||||| ||||||| |||||| ||||   ||| ||||||||| |   | ||| ||||||| ||||||||  | | ||||||||||     
T  4132618 atcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaacaaca---atctcgactttgtcaccaggttccatatttgatactact 4132714  T
Q  144 ctcagagcctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggt 202  Q
    ||| |   |||||||| |||||||||| | |||||||| ||||||||||||||||||||    
T  4132715 ctctgccactcctcattttcaaaggaggcgaatgcctctctcttatagagctgaatggt 4132773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 4319410 - 4319462
Alignment:
Q  152 ctcctcatcttcaaaggagactaatgcctcactcttatagagctgaatggtgg 204  Q
    |||||||| ||||||||||  |||||| || ||||||||||| ||||||||||    
T  4319410 ctcctcattttcaaaggaggataatgcttctctcttatagagttgaatggtgg 4319462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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