View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5905_low_4 (Length: 621)
Name: NF5905_low_4
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5905_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 19 - 606
Target Start/End: Original strand, 48279006 - 48279601
Alignment:
| Q |
19 |
acaaagttggcgaaataaaaagaaatcaacaataaattattcccatatgaaccaaaattgagtaaaacaattatctcagataaactacctctaccaaaca |
118 |
Q |
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| T |
48279006 |
acaaagttggcgaaataaaaagaaatcaacaataaattattcccatatgaaccaaaattgagtaaaacaattatctcagataaactacctctaccaaaca |
48279105 |
T |
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| Q |
119 |
tgtcaatagtcaacttggttgtttcaacttccatatttcttctcaaagttcttccttcttaaactctca--------ctcactcatcatgaaccaagaat |
210 |
Q |
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| T |
48279106 |
tgtcaatagtcaacttggttgtttcaacttccatatttcttctcaaagttcttccttcttaaactctcactcactcactcactcatcatgaaccaagaat |
48279205 |
T |
|
| Q |
211 |
aatcaaatctacacaatggcatcttgcttgaaaccacaaagcagcaatgaagatgattctgtcatactcttttcaacttctaattcttccattagtcctt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48279206 |
aatcaaatctacacaatggcatcttgcttgaaaccacaaagcagcaatgaagatgattctgtcatactcttttcaacttctaattcttccattagtcctt |
48279305 |
T |
|
| Q |
311 |
cttcctcttctttccatcattcaccaccaccaacttcatacaaactttctattaataacctcacctatactttgcacccttataaaaccattcccttttc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48279306 |
cttcctcttctttccatcattcaccaccaccaacttcatacaaactttctattaataacctcacctatactttgcacccttataaaaccattcccttttc |
48279405 |
T |
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| Q |
411 |
atttaaaagccttactcaaaaaccacatcctgtaaacatactcaaatctgtttcttttgttgccagaacttccgaaattctcgcagttgtcggacctagt |
510 |
Q |
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| T |
48279406 |
atttaaaagccttactcaaaaaccacatcctgtaaacatactcaaatctgtttcttttgttgccagaacttccgaaattgtcgcagttgtcggacctagt |
48279505 |
T |
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| Q |
511 |
ggcacaggcaaatccacccttcttagaataatcgcggggcgaataaaagacaaagatttcaaccccaaaactatctcaatcaatgatcaccctatg |
606 |
Q |
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| T |
48279506 |
ggcacaggcaaatccacccttcttagaataatcgcggggcgaataaaagacaaagatttcaaccccaaaactatctcaatcaatgatcaccctatg |
48279601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 508 - 606
Target Start/End: Original strand, 14335903 - 14336001
Alignment:
| Q |
508 |
agtggcacaggcaaatccacccttcttagaataatcgcggggcgaataaaagacaaagatttcaaccccaaaactatctcaatcaatgatcaccctatg |
606 |
Q |
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||||| ||| ||||||| |||||||| |||||||||||| ||| ||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
14335903 |
agtggtacaagcaaatctacccttctcctaataatcgcgggccgagtaaaagacaaagatttcaatccaaaaactatctcaatcaatgatcaccctatg |
14336001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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