View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5905_low_5 (Length: 605)
Name: NF5905_low_5
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5905_low_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 12 - 605
Target Start/End: Original strand, 43867371 - 43867965
Alignment:
| Q |
12 |
gagatgaaagcaacctaaggagaggggacctcaaatagcagacattattgaattattatacatgtaacacaacaaatatgtcttactcaaaaatttaatg |
111 |
Q |
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| T |
43867371 |
gagatgaaagcaacctaaggagaggggacctcaaatagcagacattattgaattattatacatgtaacacaacaaatatgtcttactcaaaaatttaatg |
43867470 |
T |
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| Q |
112 |
cacaaaccctaatgggtccataagaaatcctataattaaaaagacaaccaattagaattcagagaataagattaacttcaactctctagccaatcaacac |
211 |
Q |
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| T |
43867471 |
cacaaaccctaatgggtccataagaaatcctataattaaaaagacaaccaattagaattcagagaataagattaacttcaactctctagccaatcaacac |
43867570 |
T |
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| Q |
212 |
taagatcataccaattggtgggtcccattaacctccattaatattcctgtagcaaattaccaaaagtgcatgggcagagag-------aagnnnnnnngt |
304 |
Q |
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| T |
43867571 |
taagatcataccaattggtgggtcccattaacctccattaatattcctgtagcaaattaccaaaagtgcatgggcagagagaaaaaaaaaaaaaaaaagt |
43867670 |
T |
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| Q |
305 |
acctactgacactagtgtgtctccttcatcacattgtctagtttcaacaaacacaaaccattaattgaatcannnnnnnnnnnnngacataaaacaatat |
404 |
Q |
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| T |
43867671 |
acctactgacactagtgtgtctccttcatcacattgtctagtttcaacaaacacaaaccattaattgaatca------tttttttgacataaaacaatat |
43867764 |
T |
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| Q |
405 |
agtttagttatattctatgattatagacatgaaaggtgatgcagatgcaggtgccttgggagccaagacagcaagagcatgtgatagctgtttaagaaga |
504 |
Q |
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| T |
43867765 |
agtttagttatattctatgattatagacatgaaaggtgatgcagatgcaggtgccttgggagccaagacagcaagagcatgtgatagctgtttaagaaga |
43867864 |
T |
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| Q |
505 |
agagcacgttggttttgtgctgcagatgatgctttcctttgtcatggtcgtgacaatttggttcactctgcaaatctattagcaagtagactcgaaaggg |
604 |
Q |
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| T |
43867865 |
agagcacgttggttttgtgctgcagatgatgctttcctttgtcatggttgtgacaatttggttcactctgcaaatctattagcaagtagacacgaaaggg |
43867964 |
T |
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