View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5905_low_7 (Length: 501)

Name: NF5905_low_7
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5905_low_7
NF5905_low_7
[»] chr4 (10 HSPs)
chr4 (10-486)||(47292343-47292819)
chr4 (246-467)||(56209616-56209838)
chr4 (322-464)||(45863436-45863579)
chr4 (322-455)||(45883384-45883518)
chr4 (252-361)||(54303383-54303492)
chr4 (60-135)||(45862519-45862594)
chr4 (21-134)||(56209347-56209461)
chr4 (252-285)||(45863240-45863273)
chr4 (252-285)||(45882639-45882672)
chr4 (21-61)||(45862404-45862444)
[»] chr8 (2 HSPs)
chr8 (247-462)||(7973526-7973742)
chr8 (21-174)||(7962518-7962669)
[»] chr5 (3 HSPs)
chr5 (21-101)||(35803176-35803256)
chr5 (292-467)||(10520217-10520393)
chr5 (411-474)||(35803584-35803647)
[»] chr2 (1 HSPs)
chr2 (322-466)||(24348395-24348540)


Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 10 - 486
Target Start/End: Complemental strand, 47292819 - 47292343
Alignment:
Q  10 gacatcatctccatttatgaagttttcaatatcttctcttttctttcttgtagaagaagacaccttatccagccaatttgaataaatattgtcctgcaaa 109  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  47292819 gacatcatctccatttatgaagttttcaatatcttctcttctctttcttgtagaagaagataccttatccagccaatttgaataaatattgtcctgcaaa 47292720  T
Q  110 gcagtcatcatttcactatgatcttcgatttgttcacctctactacccttttatattcaccaagtgctacaacttctggaattacagaattgagaccacc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47292719 gcagtcatcatttcactatgatcttcgatttgttcacctctactacccttttatattcaccaagtgctacaacttctggaattacagaattgagaccacc 47292620  T
Q  210 tttaaacaaggaaacaggatcagcttcaggagacgtataaacttcttcacatgcacaagcaatgtaatattcttttcctcctattgcaggaacataagca 309  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  47292619 tttaaataaggaaacaggatcagcttcaggagacgtataaacttcttcacatgcacaagcaatgtaatattcttttcctcctattgcagggacataagca 47292520  T
Q  310 acaataagttttcctgattttctgaaattcatgatttcccttcgaatttcatgagtttagcccaaccgcaatttaaacgataaatatgaagacacactgc 409  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  47292519 acaataagttttcctgattttctgaaattcatgatttcctttcgaatttcatgagtttagcccaaccacaatttaaacgataaatatgaagacacactgc 47292420  T
Q  410 agaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggcagagatgatacctcaccatggtgct 486  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47292419 agaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggcagagatgatacctcaccatggtgct 47292343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 246 - 467
Target Start/End: Original strand, 56209616 - 56209838
Alignment:
Q  246 ataaacttcttcacatgcacaagcaatgtaatattcttttcctcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatt 345  Q
    ||||| |||||||||| ||||||||||||||||||||||  |||| |||| || ||||||||| |||| |||||| || |||||||||||||| | ||||    
T  56209616 ataaatttcttcacatacacaagcaatgtaatattctttaactccaattgaagtaacataagccacaacaagtttaccagattttctgaaatttaagatt 56209715  T
Q  346 tcccttcgaatttcat-gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaat 444  Q
    | |||||||||||||| ||||||||||||||| |||||||||  || |||| ||||| | || |||||||||||||||||||| || |||||||||| ||    
T  56209716 tgccttcgaatttcatcgagtttagcccaaccacaatttaaagtatcaatacgaagatatacggcagaaatacgatgatcataagctgctttcaacatat 56209815  T
Q  445 tatcgcaaattcgaggcagagat 467  Q
    ||||||||| | |||||||||||    
T  56209816 tatcgcaaaattgaggcagagat 56209838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 322 - 464
Target Start/End: Original strand, 45863436 - 45863579
Alignment:
Q  322 cctgattttctgaaattcatgatttcccttcgaatttcatgag-tttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgat 420  Q
    ||||||||||||||||||| |||||  ||||||||||||| || |||||||||||| |||||||||  || ||| |||||| | || ||||||||||||     
T  45863436 cctgattttctgaaattcaagatttgtcttcgaatttcatcagctttagcccaaccacaatttaaattatcaatttgaagatatacggcagaaatacgag 45863535  T
Q  421 gatcatatgcggctttcaacaaattatcgcaaattcgaggcaga 464  Q
    ||||||| || ||||||||||||||||| |||||| | ||||||    
T  45863536 gatcataagctgctttcaacaaattatctcaaatttggggcaga 45863579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 322 - 455
Target Start/End: Original strand, 45883384 - 45883518
Alignment:
Q  322 cctgattttctgaaattcatgatttcccttcgaatttcat-gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgat 420  Q
    ||||||||||||||||| | ||| |  ||||||||||||| |||||||||||||||||||||||||   | ||| |||||| ||||  |||||||||||     
T  45883384 cctgattttctgaaatttaagatctgtcttcgaatttcatcgagtttagcccaaccgcaatttaaattgtcaatttgaagatacacaccagaaatacgag 45883483  T
Q  421 gatcatatgcggctttcaacaaattatcgcaaatt 455  Q
    ||||||| || ||||||||||||||||||||||||    
T  45883484 gatcataagctgctttcaacaaattatcgcaaatt 45883518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 252 - 361
Target Start/End: Complemental strand, 54303492 - 54303383
Alignment:
Q  252 ttcttcacatgcacaagcaatgtaatattcttttcctcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatttccctt 351  Q
    ||||| |||||||| ||| | |||||| |||||| |||| ||| |||| ||||||||||  |||||||||||||||||||||||||| | ||||| ||||    
T  54303492 ttctttacatgcactagcgacgtaatactcttttactccaatttcagggacataagcaaagataagttttcctgattttctgaaatttaagatttgcctt 54303393  T
Q  352 cgaatttcat 361  Q
    ||||||||||    
T  54303392 cgaatttcat 54303383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 45862519 - 45862594
Alignment:
Q  60 tagaagaagacaccttatccagccaatttgaataaatattgtcctgcaaagcagtcatcatttcactatgatcttc 135  Q
    |||||||||| || |||||||||||||||||||| ||||| ||| | || ||||||| ||| |||| |||||||||    
T  45862519 tagaagaagagactttatccagccaatttgaatagatattatccagtaatgcagtcagcatctcacgatgatcttc 45862594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 134
Target Start/End: Original strand, 56209347 - 56209461
Alignment:
Q  21 catttatgaagttttcaatatctt-ctcttttctttcttgtagaagaagacaccttatccagccaatttgaataaatattgtcctgcaaagcagtcatca 119  Q
    |||||||||| || |||||||||| || ||||||||| | | | |||||| || ||||| |||||||||||||| ||||| |||  ||| ||||||| ||    
T  56209347 catttatgaaattgtcaatatctttctattttctttcctcttgcagaagagactttatcgagccaatttgaatagatattatccaacaatgcagtcagca 56209446  T
Q  120 tttcactatgatctt 134  Q
    | |||| ||| ||||    
T  56209447 tctcacgatgttctt 56209461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 285
Target Start/End: Original strand, 45863240 - 45863273
Alignment:
Q  252 ttcttcacatgcacaagcaatgtaatattctttt 285  Q
    ||||||||||||||||||||||||||||| ||||    
T  45863240 ttcttcacatgcacaagcaatgtaatattatttt 45863273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 285
Target Start/End: Original strand, 45882639 - 45882672
Alignment:
Q  252 ttcttcacatgcacaagcaatgtaatattctttt 285  Q
    |||||||||||| |||||||||||||||||||||    
T  45882639 ttcttcacatgcgcaagcaatgtaatattctttt 45882672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 45862404 - 45862444
Alignment:
Q  21 catttatgaagttttcaatatcttctcttttctttcttgta 61  Q
    ||||||||||||| |||| ||||||||||||||||| ||||    
T  45862404 catttatgaagttctcaacatcttctcttttctttcctgta 45862444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 247 - 462
Target Start/End: Original strand, 7973526 - 7973742
Alignment:
Q  247 taaacttcttcacatgcacaagcaatgtaatattcttttcctcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgattt 346  Q
    ||||||||||||||||||||| | ||||||||||||||||| || ||| |||  |||||||||||||||||||| ||||||||||||||||| |||||||    
T  7973526 taaacttcttcacatgcacaacctatgtaatattcttttccacccattacagcgacataagcaacaataagtttacctgattttctgaaatttatgattt 7973625  T
Q  347 cccttcgaatttcat-gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaatt 445  Q
    ||||| ||||||||| ||||||||| |||| ||| |||||| ||||||||  || | |||| |||||||||||| ||||||| |||||||||||||||||    
T  7973626 ccctttgaatttcatcgagtttagctcaactgcattttaaaggataaataacaacatacacagcagaaatacgaggatcataagcggctttcaacaaatt 7973725  T
Q  446 atcgcaaattcgaggca 462  Q
     ||||||||| ||||||    
T  7973726 ctcgcaaatttgaggca 7973742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 7962518 - 7962669
Alignment:
Q  21 catttatgaagttttcaatatcttctcttttctttcttgtagaagaagacaccttatccagccaatttgaataaatattgtcctgcaaagcagtcatcat 120  Q
    |||||||||| ||||||||||||||| |||||||||   |||||||||| ||||||||||||||||||||||||||| |||||||||| |||||| || |    
T  7962518 catttatgaaattttcaatatcttcttttttctttccaatagaagaagagaccttatccagccaatttgaataaatactgtcctgcaatgcagtcgtcgt 7962617  T
Q  121 ttcactatgatcttcgatttgttcacctctactacccttttatattcaccaagt 174  Q
     |||| || ||||| |||||||| |||||  |||||| | |||||| |||||||    
T  7962618 ctcacgataatctttgatttgttgacctc--ctacccatctatatttaccaagt 7962669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 35803176 - 35803256
Alignment:
Q  21 catttatgaagttttcaatatcttctcttttctttcttgtagaagaagacaccttatccagccaatttgaataaatattgt 101  Q
    ||||||||||||||| ||  |||||||||||||| | | |||||||||| || |||||||||||||||||||| |||||||    
T  35803176 catttatgaagttttgaacttcttctcttttcttccctctagaagaagagactttatccagccaatttgaatagatattgt 35803256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 467
Target Start/End: Complemental strand, 10520393 - 10520217
Alignment:
Q  292 attgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatttcccttcgaatttcatga-gtttagcccaaccgcaatttaaacgat 390  Q
    |||| ||| |||||||| ||||  | ||| || |||||||||||||| |  |||| |||| |||| |||| | ||||||||||||| ||| ||||| | |    
T  10520393 attgaagggacataagccacaaccattttccccgattttctgaaatttaaaatttgcctttgaatctcatcaagtttagcccaaccccaacttaaatggt 10520294  T
Q  391 aaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggcagagat 467  Q
      ||||||||| | || || ||||||| | |||||||||| |||||||| |||||| |||||||| |||| ||||||    
T  10520293 cgatatgaagataaacagcggaaatacaaggatcatatgctgctttcaagaaattaccgcaaatttgaggaagagat 10520217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 474
Target Start/End: Original strand, 35803584 - 35803647
Alignment:
Q  411 gaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggcagagatgatacct 474  Q
    ||||||||| ||||||| ||||||||||| |||| ||||||||||  |||||||||| ||||||    
T  35803584 gaaatacgaggatcataagcggctttcaagaaataatcgcaaatttcaggcagagataatacct 35803647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 466
Target Start/End: Complemental strand, 24348540 - 24348395
Alignment:
Q  322 cctgattttctgaaattcatgatttcccttcgaatttcat-gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgat 420  Q
    ||||||||| ||||||||| ||| | |||||||||||| |  | |||| |||| || |||| ||||| || |||||| ||| | ||  ||||||| |||     
T  24348540 cctgattttttgaaattcaagatgtgccttcgaatttcttctactttaccccacccacaatctaaactatcaatatggagatagaccccagaaattcgag 24348441  T
Q  421 gatcatatgcggctttcaacaaattatcgcaaattcgaggcagaga 466  Q
    ||||||| || |||||||| ||||| ||||| ||| |||| |||||    
T  24348440 gatcataggctgctttcaaaaaattctcgcatatttgaggtagaga 24348395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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