View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5905_low_8 (Length: 490)
Name: NF5905_low_8
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5905_low_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 14 - 490
Target Start/End: Complemental strand, 43868506 - 43868030
Alignment:
| Q |
14 |
aaaaactgattccaaatcatcaagttcttcatccttaacctttaacatttcatttttggatgcatccatttcattctcttgtttataatcaaacacttgt |
113 |
Q |
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| T |
43868506 |
aaaaactgattccaaatcatcaagttcttcatccttaacctttaacatttcacttttggatgcatccatttcattctcttgtttataatcaaacacttgt |
43868407 |
T |
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| Q |
114 |
cctgatgaattctcttgaatctcactactcccaacaccaagtaaactttcaacattagctgcaaattcagcaagatcaacatcaaactcacagaaactat |
213 |
Q |
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| T |
43868406 |
cctgatgaattctcttgaatctcactactcccaacaccaagtaaactttcaacattagctgcaaattcagcaagatcaacatcaaactcacagaaactat |
43868307 |
T |
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| Q |
214 |
ccaagtcacacatttcctcaaaatcaacagcatcatttttcacagtacaagtctctaaatcaaaagggttggcatcgaaaactggcacacgacacagcaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43868306 |
ccaagtcacacatttcctcaaaatcaacagcatcatttttcacagtacaagtctctaaatcaaaagggttggcatcgaaaactggcacacgacacagcaa |
43868207 |
T |
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| Q |
314 |
ctgctcctcatcagcctcgtcaatatcaacaagtagttcttgtccttgttcttcttcacctccgagttcaggaacaagtggaagaaaactagtattgaag |
413 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43868206 |
ctgctcctcatcagcctcatcaatatcaacaagtagttcttgtccttgttcttcttcacctccgagttcaggaacaagtggaagaaaactagtattgaag |
43868107 |
T |
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| Q |
414 |
agaactttttccctgatacgttgttgttgttgttgaatcgacgaatttttgttgtggcggggagttcttgctttcct |
490 |
Q |
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|||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43868106 |
agaactttttccttgagacgttgctgttgttgttgaatcgacgaatttttgttgtggcggggagttcttgctttcct |
43868030 |
T |
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