View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5905_low_9 (Length: 487)
Name: NF5905_low_9
Description: NF5905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5905_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 34976736 - 34977232
Alignment:
| Q |
1 |
ttgataccttcatcccaccctttgatcacttgcccttcattgacaaaaacaataacaaattaactgcagttcattgatgaagtaaagtcctaagagatct |
100 |
Q |
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| T |
34976736 |
ttgataccttcatcccaccctttgatcacttgcccttcattgacaaaaacaataacaaattaactgcagttcattgatgaagtaaagtcctaagagatct |
34976835 |
T |
|
| Q |
101 |
cagtctttggataaagttttatgaaacagagacacggatgttggacacgataaaacactgacaatgaaaataattgtaacacacatatcaatcacccaga |
200 |
Q |
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| T |
34976836 |
cagtcttcggatgaagttttatgaaacagagacacggatgttggaaacgataaaacactgacaatgaaaataattgtaacacacatatcaatcacccaga |
34976935 |
T |
|
| Q |
201 |
catatcttcaatctaaagtgtttgtacgata-----------------tacaaaaatcacatttgtgtaaataaaagatctattttaatatgatactatc |
283 |
Q |
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||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34976936 |
catatcttcaatctaaagtgtctgtacgataacttaaccaatacaatatacaaaaatcacatttgtgtaaataaaagatctattttaatatgatactatc |
34977035 |
T |
|
| Q |
284 |
attgtatagttcatttcctcctcatacacagcaacatgattaaaaacattgaatattcatcattttatacctcgacaaaatttacaagaggaaaacagaa |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34977036 |
attgtatagttcatttcctcctcatacacagcaacatgattaaaaacattgaatattcatcattttatacctcgacaaaatttacaagaggaaaacagaa |
34977135 |
T |
|
| Q |
384 |
agttaaatattaccttgaccaagcttaaatttgaaagtggtacccctatcacggctcgagtcaaatttggttccatcaagcaaaattccagtataat |
480 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34977136 |
agttaaatattaccttgaccaagcttaaacttgaaagtggtacccctatcacggctcgagtcaaatttggttccatcaagcaaaattccagtataat |
34977232 |
T |
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