View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5906-Insertion-2 (Length: 957)
Name: NF5906-Insertion-2
Description: NF5906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5906-Insertion-2 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 777; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 777; E-Value: 0
Query Start/End: Original strand, 9 - 956
Target Start/End: Complemental strand, 33116329 - 33115408
Alignment:
| Q |
9 |
caacccagcagtgataagagacagaagcattgcggtttgattagatgcaaaaccagctagttgaacaatagttgggctgaagtacattacggtattgatt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33116329 |
caacccagcagtgataagagacagaagcattgcggtttgattagatgcaaaaccagctagttgaacaatagttgggctgaagtacattacggtattgatt |
33116230 |
T |
|
| Q |
109 |
cctacaaattgttggaatatttgaaggcccattcctgcatacaaacctcttctcacacttgtagtttttaaaagtgtgatcatacttatcttttctgaag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33116229 |
cctacaaattgttggaatatttgaaggcccattcctgcatacaaacctcttctcacacttgtagtttttaaaagtgtgatcatacttatcttttctgaag |
33116130 |
T |
|
| Q |
209 |
attcagcttccttcaattccattgcaactgattcctgtaaagcctgaatttcagcatcaacttcttctgctgggtaaatctttctcagaattgcttttcc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33116129 |
attcagcttccttcaattccattgcaactgattcctataaagcctgaatttcagcatcaacttcttctgctgggtaaatctttctcagaattgcttttcc |
33116030 |
T |
|
| Q |
309 |
ttcctcctctttaccctgtagagacaagcaaaattctgtcacatagtggttgtagcatcgctaaaacactg-ttttgtagcggatttgaacaaactattg |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||| |||||| |||||||||||||||||||||||||||| |
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|
| T |
33116029 |
ttcctcctctttaccctgtagagacaagcaaaattctgtcacataatgattgtagcatccctaagacactgtttttgtagcggatttgaacaaactattg |
33115930 |
T |
|
| Q |
408 |
attgacaacattggac-aaacaatgtagtttctcacaaaatgaaatatagatgatttaactaacctttcgaaacaaccaacgaggtgattctggcagcca |
506 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33115929 |
attgacaacattggacaaaacaatgta----------------------gatgatttaactaacctttcgaaacaaccaacgaggtgattctggcagcca |
33115852 |
T |
|
| Q |
507 |
aaacattagtagcaattgtagtatagcaggtaatgctgctacaccaagcatccacctccatgttccaggtgcctaaacaaatcaataatcaataatgttt |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33115851 |
aaacattagtagcaattgtagtatagcaggtaatgctgctacaccaagcatccacctccatgttccaggtgcctaaacaaatcaataatcaataatg--- |
33115755 |
T |
|
| Q |
607 |
aatttaaggtagatacaagattatgaaatgaaatatctaatgaatgaatcacaaatttagtaaaat-aaaaaatgcatggaacgatcttggaattagaaa |
705 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
33115754 |
---ttaaggtagatagaagattatgaaatgaaatatttaatgaatgaatcacaaatttagtaaaataaaaaaatgcatggaacgatcttggaattagaaa |
33115658 |
T |
|
| Q |
706 |
ttcttaatcacaaaagttctttcacgacaatttcaacctaaaaggactttcctatttgaaaattttataattatgtggatcattttaaagcttcatcaat |
805 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
33115657 |
ttcttaatcacaaaagttatttcacgacaatttcaacct-aaaggaccttcctatttgaaaattttataattatgtcaatcattttaaagcttcatcaat |
33115559 |
T |
|
| Q |
806 |
aaaagtgtcatgattaacttattttctttttacaaggcacaaacaacatgatttcgatataaggagaaagaaacaaaaatcatgatctaatataatagtt |
905 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33115558 |
aaaagtgtcatgattaacttattttctttttacaaggcacaaacaacatgatttcgatataaggagaaagaaacaaaaatcatgatctaatataatagtt |
33115459 |
T |
|
| Q |
906 |
ttcataccttagtgaaggccaagttgatgagataggagaggaattgtcccc |
956 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
33115458 |
ttcataccttagtgaaggccaagttgatgagataggagagaaattgtcccc |
33115408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 33119398 - 33119329
Alignment:
| Q |
89 |
agtacattacggtattgattcctacaaattgttggaatatttgaaggcccattcctgcatacaaacctct |
158 |
Q |
| |
|
||||||| || || |||||||| |||||||||||||| ||| ||| |||||||||||||| |||||||| |
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|
| T |
33119398 |
agtacatgacagtgttgattccaacaaattgttggaaaattgcaagtcccattcctgcatataaacctct |
33119329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 9 - 307
Target Start/End: Original strand, 1084083 - 1084381
Alignment:
| Q |
9 |
caacccagcagtgataagagacagaagcattgcggtttgattagatgcaaaaccagctagttgaacaatagttgggctgaagtacattacggtattgatt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
1084083 |
caacccagcagtgataagagacagaagcattgcggtttgattagatgcaaaaccagctagttgaacaatagttgggctgaagtacattacgatattgatt |
1084182 |
T |
|
| Q |
109 |
cctacaaattgttggaatatttgaaggcccattcctgcatacaaacctcttctcacacttgtagtttttaaaagtgtgatcatacttatcttttctgaag |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1084183 |
cctacaaattgttggaatatttgaaggcccattcctgcatacaaacctcttctcacacttgtagtttttaaaagtgtcatcatacttatcttttctgaag |
1084282 |
T |
|
| Q |
209 |
attcagcttccttcaattccattgcaactgattcctgtaaagcctgaatttcagcatcaacttcttctgctgggtaaatctttctcagaattgcttttc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1084283 |
attcagcttccttcaattccattgcaactgattcctgtaaagcctgaatttcagcatcaacttcttctgctgggtaaatctttctcagaattgcttttc |
1084381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 3e-26; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 52 - 161
Target Start/End: Original strand, 21559249 - 21559358
Alignment:
| Q |
52 |
gatgcaaaaccagctagttgaacaatagttgggctgaagtacattacggtattgattcctacaaattgttggaatatttgaaggcccattcctgcataca |
151 |
Q |
| |
|
||||||||||||||||||||||| || ||||| ||| |||||||||| || |||||||| |||||||||||||| ||||| || |||| ||||||||| | |
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|
| T |
21559249 |
gatgcaaaaccagctagttgaacgatggttggactgtagtacattactgtgttgattccgacaaattgttggaagatttgtagtcccactcctgcatata |
21559348 |
T |
|
| Q |
152 |
aacctcttct |
161 |
Q |
| |
|
|||||||||| |
|
|
| T |
21559349 |
aacctcttct |
21559358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 464 - 588
Target Start/End: Original strand, 21559691 - 21559815
Alignment:
| Q |
464 |
aactaacctttcgaaacaaccaacgaggtgattctggcagccaaaacattagtagcaattgtagtatagcaggtaatgctgctacaccaagcatccacct |
563 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||| ||| || ||| | || | |||| || || |||| |||||| ||||| | ||||||||| |
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|
| T |
21559691 |
aactaacctttctgaacaaccaacgaggcgattctgggagcataagcatcaatacgatttgtgttaatgccggtactgctgcaacacctaacatccacct |
21559790 |
T |
|
| Q |
564 |
ccatgttccaggtgcctaaacaaat |
588 |
Q |
| |
|
||||||||| ||||||| ||||||| |
|
|
| T |
21559791 |
ccatgttcctggtgcctgaacaaat |
21559815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 911 - 954
Target Start/End: Original strand, 21493229 - 21493272
Alignment:
| Q |
911 |
accttagtgaaggccaagttgatgagataggagaggaattgtcc |
954 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
21493229 |
accttagtaaaggccaagttgatgagataggaaaggaactgtcc |
21493272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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