View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5906-Insertion-3 (Length: 875)

Name: NF5906-Insertion-3
Description: NF5906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5906-Insertion-3
NF5906-Insertion-3
[»] chr7 (8 HSPs)
chr7 (602-875)||(7964444-7964718)
chr7 (269-441)||(7961576-7961744)
chr7 (436-543)||(7964278-7964385)
chr7 (729-870)||(18099552-18099694)
chr7 (729-826)||(14952377-14952475)
chr7 (729-826)||(15379970-15380068)
chr7 (666-723)||(41521006-41521063)
chr7 (672-723)||(1824588-1824639)
[»] scaffold0059 (1 HSPs)
scaffold0059 (732-870)||(36896-37035)
[»] chr8 (6 HSPs)
chr8 (602-723)||(1838348-1838469)
chr8 (644-723)||(30587311-30587390)
chr8 (729-871)||(22262681-22262824)
chr8 (668-722)||(473505-473559)
chr8 (662-714)||(22489212-22489264)
chr8 (669-723)||(31671648-31671702)
[»] chr5 (4 HSPs)
chr5 (729-875)||(22805376-22805523)
chr5 (668-729)||(1243003-1243064)
chr5 (750-801)||(19219458-19219509)
chr5 (671-720)||(6689898-6689947)
[»] chr4 (1 HSPs)
chr4 (734-875)||(12812207-12812349)
[»] chr1 (5 HSPs)
chr1 (729-855)||(17021319-17021446)
chr1 (750-875)||(21292279-21292404)
chr1 (672-723)||(13843001-13843052)
chr1 (668-715)||(23920810-23920857)
chr1 (188-255)||(46073458-46073525)
[»] chr2 (5 HSPs)
chr2 (729-875)||(24985957-24986104)
chr2 (729-875)||(25596568-25596715)
chr2 (729-822)||(27604754-27604848)
chr2 (777-875)||(23802116-23802214)
chr2 (750-801)||(17741488-17741539)
[»] chr3 (3 HSPs)
chr3 (22-185)||(47669864-47670018)
chr3 (371-460)||(47669767-47669863)
chr3 (631-680)||(47668072-47668121)
[»] scaffold0054 (1 HSPs)
scaffold0054 (729-875)||(78140-78287)
[»] chr6 (2 HSPs)
chr6 (673-723)||(32868836-32868886)
chr6 (7-63)||(8747639-8747695)
[»] scaffold0031 (1 HSPs)
scaffold0031 (750-875)||(34123-34248)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-122; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 602 - 875
Target Start/End: Original strand, 7964444 - 7964718
Alignment:
Q  602 caattataaggtaattagggaaataataccaataatagcaagtttaaaagaagtacgcattctaagaagatgacaaatgtcatacttgccataatactaa 701  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7964444 caattataaggtaattagggaaatattaccaataatagcaagtttaaaagaagtaagcattctaagaagatgacaaatgtcatacttgccataatactaa 7964543  T
Q  702 gcttgctttattattatctataaataaatattgttatgtgcccctatg-tttgttgttggatattcctgacaacttcatcggcatcatgatttctatcca 800  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||| |||   |||||||||| ||||||    
T  7964544 gcttgctttattattatctataaataaatattgttatgtgctcctatgttttgttgttggacattcctgacaactttatcaaaatcatgatttttatcca 7964643  T
Q  801 ctaagaccactttaggttgaccttgaatcagtggctcgatcgattgggcttgaggcacatgttgtggcctctgaa 875  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7964644 ctaagaccacttcaggttgaccttgaatcagtggctcgatcgattgggcttgaggctcatgttgtggcctctgaa 7964718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 269 - 441
Target Start/End: Original strand, 7961576 - 7961744
Alignment:
Q  269 attaggcagaatccttcattaatcatcacaaattctattgcctcgatcataaacgcatatgcaacaaatacaaagcggcatttattaaatttacacagag 368  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7961576 attaggcagaatctttcattaatcatcacaaattctattgcctc----ataaacgcatatgcaacaaatacaaagcggcatttattaaatttacatagag 7961671  T
Q  369 aacgggacacttatgagagaaaattgaaaagaaaaatcaaagctttttgtattcgaaagaagaacaggaccgt 441  Q
    |||||| |||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||    
T  7961672 aacggggcacttatgagagaaaattaaaaagaaaaatcaaagttttttgtattctaaagaagaacaggaccgt 7961744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 436 - 543
Target Start/End: Original strand, 7964278 - 7964385
Alignment:
Q  436 gaccgttgaatagaatatggaccaaaagagtgcacattccaatcaatctcaacaaatacgtacatttttcaattttttagtgcataagagtacaacttcc 535  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||    
T  7964278 gaccgttgaatagaatatggaccaaaagagggcacattccaatcaatctcaacagacacgtgcatttttcaattttttagtgcataagagtacaacttcc 7964377  T
Q  536 aaaccaag 543  Q
    || |||||    
T  7964378 aatccaag 7964385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 729 - 870
Target Start/End: Complemental strand, 18099694 - 18099552
Alignment:
Q  729 atattgttatgtgcccctatgttt-gttgttggatattcctgacaacttcatcggcatcatgatttctatccactaagaccactttaggttgaccttgaa 827  Q
    |||||||||||| | ||||||||| ||||||||| |||||| |||||||||||| ||| || ||||||||  || |||| ||||| ||||||| ||||||    
T  18099694 atattgttatgtactcctatgttttgttgttggacattcctaacaacttcatcgacattattatttctatttaccaagatcacttcaggttgatcttgaa 18099595  T
Q  828 tcagtggctcgatcgattgggcttgaggcacatgttgtggcct 870  Q
    | |  || ||||||| ||||| |||||||||||||||| ||||    
T  18099594 ttatgggttcgatcggttggggttgaggcacatgttgtagcct 18099552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 729 - 826
Target Start/End: Original strand, 14952377 - 14952475
Alignment:
Q  729 atattgttatgtgcccctatgttt-gttgttggatattcctgacaacttcatcggcatcatgatttctatccactaagaccactttaggttgaccttga 826  Q
    |||||||||||| | ||||||||| ||||||||| | |||| |||||||||||||||| || |||| ||   || |||| |||||||||||||||||||    
T  14952377 atattgttatgtactcctatgttttgttgttggacaatcctaacaacttcatcggcattatcatttgtacataccaagatcactttaggttgaccttga 14952475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 729 - 826
Target Start/End: Original strand, 15379970 - 15380068
Alignment:
Q  729 atattgttatgtgcccctatgttt-gttgttggatattcctgacaacttcatcggcatcatgatttctatccactaagaccactttaggttgaccttga 826  Q
    |||||||||||| | ||||||||| ||||||||| | |||| |||||||||||||||| || |||| ||   || |||| |||||||||||||||||||    
T  15379970 atattgttatgtactcctatgttttgttgttggacaatcctaacaacttcatcggcattatcatttgtacataccaagatcactttaggttgaccttga 15380068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 666 - 723
Target Start/End: Complemental strand, 41521063 - 41521006
Alignment:
Q  666 agaagatgacaaatgtcatacttgccataatactaagcttgctttattattatctata 723  Q
    ||||||||||||||| || |||||||| |||||||| ||| |||||||||||||||||    
T  41521063 agaagatgacaaatggcaaacttgccaaaatactaaacttcctttattattatctata 41521006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 672 - 723
Target Start/End: Original strand, 1824588 - 1824639
Alignment:
Q  672 tgacaaatgtcatacttgccataatactaagcttgctttattattatctata 723  Q
    ||||||||| |||||||| || |||||| || ||||||||||||||||||||    
T  1824588 tgacaaatggcatacttgtcaaaatacttagtttgctttattattatctata 1824639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 68; Significance: 7e-30; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 732 - 870
Target Start/End: Original strand, 36896 - 37035
Alignment:
Q  732 ttgttatgtgcccctatgttt-gttgttggatattcctgacaacttcatcggcatcatgatttctatccactaagaccactttaggttgaccttgaatca 830  Q
    ||||||||||| ||||||||| |||||| ||  ||||| |||||||||| |||||||||||||||||||||||| ||||||| ||||||| |||||||||    
T  36896 ttgttatgtgctcctatgttttgttgtttgaccttcctaacaacttcataggcatcatgatttctatccactaaaaccacttcaggttgaacttgaatca 36995  T
Q  831 gtggctcgatcgattgggcttgaggcacatgttgtggcct 870  Q
     ||| ||||  | ||||| |||||||||| ||||||||||    
T  36996 ctggttcgactggttggggttgaggcacaagttgtggcct 37035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 1e-28; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 602 - 723
Target Start/End: Original strand, 1838348 - 1838469
Alignment:
Q  602 caattataaggtaattagggaaataataccaataatagcaagtttaaaagaagtacgcattctaagaagatgacaaatgtcatacttgccataatactaa 701  Q
    |||||| ||| |||||| |||||| |||| | | ||||||| ||||||||||||| ||||||| ||||||||||||||| || |||||||| ||||||||    
T  1838348 caattaaaagataattaaggaaatcatactacttatagcaattttaaaagaagtaagcattcttagaagatgacaaatggcaaacttgccaaaatactaa 1838447  T
Q  702 gcttgctttattattatctata 723  Q
    | ||||||||||||||||||||    
T  1838448 gtttgctttattattatctata 1838469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 644 - 723
Target Start/End: Original strand, 30587311 - 30587390
Alignment:
Q  644 tttaaaagaagtacgcattctaagaagatgacaaatgtcatacttgccataatactaagcttgctttattattatctata 723  Q
    ||||||||||| | ||||||| |||||||||||||| ||| |||||||| |||||| |||||||||||||||||||||||    
T  30587311 tttaaaagaagcaagcattcttagaagatgacaaatatcaaacttgccaaaatacttagcttgctttattattatctata 30587390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 729 - 871
Target Start/End: Original strand, 22262681 - 22262824
Alignment:
Q  729 atattgttatgtgcccctatgtt-tgttgttggatattcctgacaacttcatcggcatcatgatttctatccactaagaccactttaggttgaccttgaa 827  Q
    |||||||||||  | |||||||| |||||||||| |||||| |||||||||||| ||| || ||||| ||| || |||| || || ||||||| | || |    
T  22262681 atattgttatgcactcctatgttctgttgttggacattcctaacaacttcatcgacattatcatttcgatctaccaagatcatttcaggttgaacctgta 22262780  T
Q  828 tcagtggctcgatcgattgggcttgaggcacatgttgtggcctc 871  Q
    | | ||| |||| || ||||| |||||||||| ||||| |||||    
T  22262781 ttactggttcgaccggttggggttgaggcacaggttgttgcctc 22262824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 668 - 722
Target Start/End: Original strand, 473505 - 473559
Alignment:
Q  668 aagatgacaaatgtcatacttgccataatactaagcttgctttattattatctat 722  Q
    ||||||||||||| || |||||||| || ||||| ||||||||||||||||||||    
T  473505 aagatgacaaatgacaaacttgccaaaacactaaacttgctttattattatctat 473559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 662 - 714
Target Start/End: Original strand, 22489212 - 22489264
Alignment:
Q  662 tctaagaagatgacaaatgtcatacttgccataatactaagcttgctttatta 714  Q
    ||||| |||||||||||||||| |||||| ||||||||||| ||| |||||||    
T  22489212 tctaataagatgacaaatgtcacacttgctataatactaagattgttttatta 22489264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 669 - 723
Target Start/End: Original strand, 31671648 - 31671702
Alignment:
Q  669 agatgacaaatgtcatacttgccataatactaagcttgctttattattatctata 723  Q
    |||||| |||||||||| |||||  || | |||||||||||||||||||||||||    
T  31671648 agatgataaatgtcatatttgcccaaaaattaagcttgctttattattatctata 31671702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 2e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 729 - 875
Target Start/End: Original strand, 22805376 - 22805523
Alignment:
Q  729 atattgttatgtgcccctatgttt-gttgttggatattcctgacaacttcatcggcatcatgatttctatccactaagaccactttaggttgaccttgaa 827  Q
    |||||||||||||| ||||||||| ||||||| | |||||| ||||||||||||||||||| |||| |||| |  |||||||| | ||||||||||||||    
T  22805376 atattgttatgtgctcctatgttttgttgttgcacattcctaacaacttcatcggcatcattatttatatctaacaagaccacctcaggttgaccttgaa 22805475  T
Q  828 tcagtggctcgatcgattgggcttgaggcacatgttgtggcctctgaa 875  Q
    ||| ||| ||||||| ||||| | |||| ||| ||||||| |||||||    
T  22805476 tcattggttcgatcggttggggtcgaggaacaggttgtggtctctgaa 22805523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 668 - 729
Target Start/End: Original strand, 1243003 - 1243064
Alignment:
Q  668 aagatgacaaatgtcatacttgccataatactaagcttgctttattattatctataaataaa 729  Q
    ||||||||||||| || |||| ||| |||| |||| |||||||||||||||||||| |||||    
T  1243003 aagatgacaaatgacaaacttaccaaaatattaagtttgctttattattatctatagataaa 1243064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 750 - 801
Target Start/End: Complemental strand, 19219509 - 19219458
Alignment:
Q  750 tttgttgttggatattcctgacaacttcatcggcatcatgatttctatccac 801  Q
    |||||||||||||||| || ||||||||  | ||||||||||||||||||||    
T  19219509 tttgttgttggatatttctaacaacttcgactgcatcatgatttctatccac 19219458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 671 - 720
Target Start/End: Original strand, 6689898 - 6689947
Alignment:
Q  671 atgacaaatgtcatacttgccataatactaagcttgctttattattatct 720  Q
    |||||| ||| || |||||||| ||||||||| |||||||||||||||||    
T  6689898 atgacagatgacaaacttgccaaaatactaagtttgctttattattatct 6689947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 734 - 875
Target Start/End: Complemental strand, 12812349 - 12812207
Alignment:
Q  734 gttatgtgcccctatgtttgtt-gttggatattcctgacaacttcatcggcatcatgatttctatccactaagaccactttaggttgaccttgaatcagt 832  Q
    ||||||||| ||||||||| || ||| || |||||| |||||||||||| ||| || |||||||||||| |||| ||| | | ||||||||||||||| |    
T  12812349 gttatgtgctcctatgtttttttgttagacattcctaacaacttcatcgacattattatttctatccaccaagatcacctcaagttgaccttgaatcact 12812250  T
Q  833 ggctcgatcgattgggcttgaggcacatgttgtggcctctgaa 875  Q
    || ||||||| ||||| |||||||| | |||||||||||||||    
T  12812249 ggttcgatcggttggggttgaggcataggttgtggcctctgaa 12812207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 1e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 729 - 855
Target Start/End: Original strand, 17021319 - 17021446
Alignment:
Q  729 atattgttatgtgcccctatgttt-gttgttggatattcctgacaacttcatcggcatcatgatttctatccactaagaccactttaggttgaccttgaa 827  Q
    ||||| |||||||  ||||||||| |||||| || |||||| | |||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||    
T  17021319 atatttttatgtgttcctatgttttgttgttcgacattcctaataacttcatcggcatcatggtttctatccactaataccacttcaggttgaccttgaa 17021418  T
Q  828 tcagtggctcgatcgattgggcttgagg 855  Q
    ||| | | ||||| | ||||| ||||||    
T  17021419 tcactagttcgataggttggggttgagg 17021446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 750 - 875
Target Start/End: Complemental strand, 21292404 - 21292279
Alignment:
Q  750 tttgttgttggatattcctgacaacttcatcggcatcatgatttctatccactaagaccactttaggttgaccttgaatcagtggctcgatcgattgggc 849  Q
    |||||||||||| |||||| | |||||||||||||| || ||||||||| || |||| ||||| |||||||||||| || | ||| |||| || |||||     
T  21292404 tttgttgttggacattcctaaaaacttcatcggcattatcatttctatctaccaagatcacttcaggttgaccttgtattactggttcgaccggttgggg 21292305  T
Q  850 ttgaggcacatgttgtggcctctgaa 875  Q
     ||||||||||||||| |||||||||    
T  21292304 ctgaggcacatgttgttgcctctgaa 21292279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 672 - 723
Target Start/End: Complemental strand, 13843052 - 13843001
Alignment:
Q  672 tgacaaatgtcatacttgccataatactaagcttgctttattattatctata 723  Q
    ||||||||||||||||||||| || |||||  ||||||||||||||||||||    
T  13843052 tgacaaatgtcatacttgccaaaaaactaacattgctttattattatctata 13843001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 715
Target Start/End: Original strand, 23920810 - 23920857
Alignment:
Q  668 aagatgacaaatgtcatacttgccataatactaagcttgctttattat 715  Q
    ||||||||||||| || |||||||| ||||||||| ||||||||||||    
T  23920810 aagatgacaaatggcaaacttgccaaaatactaagtttgctttattat 23920857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 46073525 - 46073458
Alignment:
Q  188 gttgtagtaactcaccatgcttaatatcaggcttgctcttagacaaacacactcataggtactctatc 255  Q
    |||||||||||| ||||| ||||  | | ||||||||||||||||||||| ||| ||| |||||||||    
T  46073525 gttgtagtaacttaccatacttatcaccgggcttgctcttagacaaacactctcttagatactctatc 46073458  T

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Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 729 - 875
Target Start/End: Complemental strand, 24986104 - 24985957
Alignment:
Q  729 atattgttatgtgcccctatgttt-gttgttggatattcctgacaacttcatcggcatcatgatttctatccactaagaccactttaggttgaccttgaa 827  Q
    |||||||||||| | ||||||||| ||||||||| ||| || |||||||||||| ||| || ||||||||| || |||| ||||| |||||||||||| |    
T  24986104 atattgttatgtactcctatgttttgttgttggacatttctaacaacttcatcgacattattatttctatcaaccaagatcacttcaggttgaccttgta 24986005  T
Q  828 tcagtggctcgatcgattgggcttgaggcacatgttgtggcctctgaa 875  Q
    | | ||| |||| || |||||  ||||||||| ||||| |||||||||    
T  24986004 ttattggttcgaccggttggggctgaggcacaagttgttgcctctgaa 24985957  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 729 - 875
Target Start/End: Original strand, 25596568 - 25596715
Alignment:
Q  729 atattgttatgtgcccctatgttt-gttgttggatattcctgacaacttcatcggcatcatgatttctatccactaagaccactttaggttgaccttgaa 827  Q
    |||||||||||||| ||||||||| ||||||||| |||||| ||| ||| | || |||||| |||||| || |  ||||| || | | ||||||||||||    
T  25596568 atattgttatgtgctcctatgttttgttgttggacattcctaacatcttgaccgacatcattatttctgtctaacaagactacctcaagttgaccttgaa 25596667  T
Q  828 tcagtggctcgatcgattgggcttgaggcacatgttgtggcctctgaa 875  Q
    ||| ||| |||| || ||||| |||||||||| ||||| |||||||||    
T  25596668 tcattggttcgaccggttggggttgaggcacaagttgtagcctctgaa 25596715  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 729 - 822
Target Start/End: Complemental strand, 27604848 - 27604754
Alignment:
Q  729 atattgttatgtgcccctatgttt-gttgttggatattcctgacaacttcatcggcatcatgatttctatccactaagaccactttaggttgacc 822  Q
    |||||||||||  | ||||||||| ||||||||| |||||| |||||||||| | ||| || |||||||||||| |||| ||||| |||||||||    
T  27604848 atattgttatgcactcctatgttttgttgttggacattcctaacaacttcattgacattattatttctatccaccaagatcacttcaggttgacc 27604754  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 777 - 875
Target Start/End: Original strand, 23802116 - 23802214
Alignment:
Q  777 catcggcatcatgatttctatccactaagaccactttaggttgaccttgaatcagtggctcgatcgattgggcttgaggcacatgttgtggcctctgaa 875  Q
    |||| |||| || |||||||||||| |||| ||| | ||||||||||||||| | ||| ||||  | ||||| |||||||||| |||||||||| ||||    
T  23802116 catcagcattatcatttctatccaccaagatcacctcaggttgaccttgaattactggttcgactggttggggttgaggcacaggttgtggcctttgaa 23802214  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 750 - 801
Target Start/End: Complemental strand, 17741539 - 17741488
Alignment:
Q  750 tttgttgttggatattcctgacaacttcatcggcatcatgatttctatccac 801  Q
    |||||||||||| |||||| ||||||||| | ||||||||||| ||||||||    
T  17741539 tttgttgttggacattcctaacaacttcagctgcatcatgattcctatccac 17741488  T

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Target: chr3 (Bit Score: 51; Significance: 9e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 47670018 - 47669864
Alignment:
Q  22 actttcaaactaacatcataagaatgtctaccgtgtgtgaac---caggattaatgtatgtcaaatcattcacaaattgaagtacataccttgctctaga 118  Q
    ||||||||| |||||| |||||||||||||| |||| |||||   ||||||||||||||||||||||||| | |||||| |||         ||| || |    
T  47670018 actttcaaattaacatgataagaatgtctacggtgtatgaacttacaggattaatgtatgtcaaatcatttataaattggagt---------gctgtaaa 47669928  T
Q  119 aaagtattcattagtatatttcaaataagataaggatcgatctaaatgtgtgctaattataagaaag 185  Q
    |   |||||||||| ||| ||||||||||||||||||| |||||||||||||||||| |||| ||||    
T  47669927 a---tattcattagcatacttcaaataagataaggatcaatctaaatgtgtgctaatcataaaaaag 47669864  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 371 - 460
Target Start/End: Complemental strand, 47669863 - 47669767
Alignment:
Q  371 cgggacacttatgagagaaaattgaaaagaaaaatcaaag------ctttttgtattcgaaagaagaacagga-ccgttgaatagaatatggaccaa 460  Q
    |||| |||||||||||||||| ||||||||||||  |||       |||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  47669863 cggggcacttatgagagaaaaatgaaaagaaaaaaaaaaaaaaaaactttttgtattctaaagaagaacaggacccgttgaatagaatatggaccaa 47669767  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 631 - 680
Target Start/End: Complemental strand, 47668121 - 47668072
Alignment:
Q  631 caataatagcaagtttaaaagaagtacgcattctaagaagatgacaaatg 680  Q
    |||||||||||||||||||||||||| ||||||| ||| |||||||||||    
T  47668121 caataatagcaagtttaaaagaagtaagcattcttagaggatgacaaatg 47668072  T

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Target: scaffold0054 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 729 - 875
Target Start/End: Complemental strand, 78287 - 78140
Alignment:
Q  729 atattgttatgtgcccctatgttt-gttgttggatattcctgacaacttcatcggcatcatgatttctatccactaagaccactttaggttgaccttgaa 827  Q
    |||||||||||  | ||||||||| ||||||||| |||||| ||||||||||| |||| || ||||||||| || |||| ||||| |||||||||||| |    
T  78287 atattgttatgcactcctatgttttgttgttggacattcctaacaacttcatcagcattatcatttctatctaccaagatcacttcaggttgaccttgta 78188  T
Q  828 tcagtggctcgatcgattgggcttgaggcacatgttgtggcctctgaa 875  Q
    | | ||| || | || || ||  ||||||||||||||| |||||||||    
T  78187 ttactggttctaccggttagggctgaggcacatgttgttgcctctgaa 78140  T

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Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 673 - 723
Target Start/End: Original strand, 32868836 - 32868886
Alignment:
Q  673 gacaaatgtcatacttgccataatactaagcttgctttattattatctata 723  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32868836 gacaaatgtcatacttgctataatactaagcttgctttattattatctata 32868886  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 8747639 - 8747695
Alignment:
Q  7 caaaaccatgatgagactttcaaactaacatcataagaatgtctaccgtgtgtgaac 63  Q
    |||||||||||||||||||||||| |||||| ||| ||||||| || ||||||||||    
T  8747639 caaaaccatgatgagactttcaaattaacatgatatgaatgtccacggtgtgtgaac 8747695  T

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Target: scaffold0031 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 750 - 875
Target Start/End: Original strand, 34123 - 34248
Alignment:
Q  750 tttgttgttggatattcctgacaacttcatcggcatcatgatttctatccactaagaccactttaggttgaccttgaatcagtggctcgatcgattgggc 849  Q
    |||||||||||| |||||| |||||||||||||||| || |||||||||||| || | ||||| ||||||||| ||||| | ||| ||||  | |||||     
T  34123 tttgttgttggacattcctaacaacttcatcggcattattatttctatccaccaatatcacttcaggttgaccctgaattactggttcgactggttgggg 34222  T
Q  850 ttgaggcacatgttgtggcctctgaa 875  Q
    || ||| ||| |||||||||| ||||    
T  34223 tttaggtacaggttgtggcctttgaa 34248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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