View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5906-Insertion-4 (Length: 827)
Name: NF5906-Insertion-4
Description: NF5906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5906-Insertion-4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 9 - 593
Target Start/End: Original strand, 32733310 - 32733884
Alignment:
| Q |
9 |
gagtccacatatatttggtgtagctctttatggacattaaattgtattgatctaaaactgataaaataaaaattgttttattcactccta---ggtgaat |
105 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
32733310 |
gagtccacatatatttggggtagctctttatggacattaaattgtattgatc---aactgataaaataaaaattgttttattctctcctactaggtgaat |
32733406 |
T |
|
| Q |
106 |
aatttggatgaattgcaagacgagtggcaaattgacnnnnnnnctacactttatagcttcacaaaatcaaatcatgatggtttattaaacccgcactcat |
205 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| | | |||||||||||||| |
|
|
| T |
32733407 |
aatttggatgaattgcgagacgagtggcaaattgacaaaaa--ctacagtttatagcttcacaaaatcaaatattgatggtatttcaaacccgcactcat |
32733504 |
T |
|
| Q |
206 |
ccaaacatgagctaaatcgtttattgtgacttgtgagtcatgttttccactctcccttactttgaaactctgcctccctctatctaagcattcttcctag |
305 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32733505 |
ccaaacatgagctaaatcgtttattgt-------gagtcatgttttccactctccctcactttgaaactctgcctccctctatctaagcattcttcctag |
32733597 |
T |
|
| Q |
306 |
cttcgtcttccattttatattgtgattgacctcattcttccatttcttcacaaatcaaagcctcattacctgtcatcttcaagtaccattgggattcatg |
405 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32733598 |
cttcctcttccattttctattgtgattgacctcattcttccatttcttcacaaatcaaagcctcattacctgtcatcttcaagtaccattgggattcatg |
32733697 |
T |
|
| Q |
406 |
ctataggttatgatcaaggtaattgagtaattttgctattattgtttgtttgtgaagtatagaaacatgctatagcttatcctacacattgcggggaccg |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32733698 |
ctataggttatgatcaaggtaattgagtaattttgctattattgtttgtttgtgaggtatagaaacatgctatagcttatcctacacattgcggggaccg |
32733797 |
T |
|
| Q |
506 |
gggaataaagggtagcaagctatagaactccaatgctgcagaataaaatattttagaggataatatccgtgacgctactcattttata |
593 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
32733798 |
gggaataaagggcagcaagctatagaactccaatgctgcagaataagata-tttagaggataatatctgtgacgctacttattttata |
32733884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 586 - 827
Target Start/End: Original strand, 32735089 - 32735322
Alignment:
| Q |
586 |
attttatattatgtggattatataagaggcaattgtc-actcaactatgctactatatcattattatcatctgtttattcctcatccagaaacggccgac |
684 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32735089 |
attttatattatgtggattatataagaggcaattgtccactcaactatgctactatatc---------atctgtttattcctcatccagaaacggccgac |
32735179 |
T |
|
| Q |
685 |
agaaatgaattatgtggaaagaaatgaatgtttccctaaaataattagaatggtcaaaccgccaccttgcaaagcacattctttccatcaccttatatcc |
784 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32735180 |
agaaatgaattatgtggaaagaaatgaatgtttccctaaaataattagaatggtcaaaccgccaccttgcaaagcacattctttccatcaccttatatcc |
32735279 |
T |
|
| Q |
785 |
tataatttgaccagtataatataatgtataagtacgattttga |
827 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32735280 |
tataatttgaccagtataatataatgtataagtacgattttga |
32735322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University