View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5906-Insertion-5 (Length: 575)
Name: NF5906-Insertion-5
Description: NF5906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5906-Insertion-5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 532; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 8 - 575
Target Start/End: Original strand, 47391063 - 47391628
Alignment:
| Q |
8 |
aaataaaataaggggtgaagagagaacctcagattctttttggcgctgcttattctgagctgacacttctcaatcctctaatatcttctctttcaaatca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47391063 |
aaataaaataaggggtgaagagagaacctcagattctttttggcgctgcttattctgagctgacacttctcaatcctctaatatcttccctttcaaatca |
47391162 |
T |
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| Q |
108 |
ggaatctccatttgcagcttagctttttctgttttcccaagctagaagtttcttcaaatattttttctccttctttgcgacttccaagcaagctgtcacc |
207 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47391163 |
gaaatctccatttgcagcttagctttttctgttttcccaagctagaagtttcttcaaatattttttctccttctttgcgacttccaagcaagctgtcacc |
47391262 |
T |
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| Q |
208 |
gactctgatgcacttaatttggaggcctccatctctgctctgatttcagcattctcagtctctaatcttctcacagctccatttgcacggtccacttgac |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47391263 |
gactctgatgcacttaatttggaggcctccatctctgctctgatttcagcattctcagtctctaatcttctcacagctccatttgcacggtccacttgac |
47391362 |
T |
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| Q |
308 |
cactagcttttctcaaagcattctccatctccgagagtctcttcatagttgtgtcctcaagtgcctgtttccctttcttcaatttctgggtctcctctct |
407 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47391363 |
cactagcctttctcaaagcattctccatctccgagagtctcttcatagttgtgtcctcaagtgcctgtttccctttcttcaatttct-ggtctcctctct |
47391461 |
T |
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| Q |
408 |
atccatccgtaatgttttgagctcagtcaaatcactgcttagcttctttgcggcctgcaatgctttttgatatgcccaccccattctttccgctgcttgg |
507 |
Q |
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| T |
47391462 |
atccatccataatgttttgagctcagtcaaatcactgcttagcttctttgcggcctgcaatgctttctgatatgccca-cccattctttccgctgcttgg |
47391560 |
T |
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| Q |
508 |
cctgtttttccaaatcctttatctgatgaaatatactcactatcacctcatccttctgatcctcagcc |
575 |
Q |
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| T |
47391561 |
cctgtttttccaaatcctttatctgatgaaatatactcactatcacctcatccttctgatcctcagcc |
47391628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 8 - 575
Target Start/End: Complemental strand, 40625066 - 40624505
Alignment:
| Q |
8 |
aaataaaataaggggtgaagagagaacctcagattctttttggcgctgcttattctgagctgacacttctcaatcctctaatatcttctctttcaaatca |
107 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40625066 |
aaataaaataaggggtgaagagagaacctcagcttctttttggcgctgcttattctgagctgacacttctcgatcctctaatatcttctctttcaaatca |
40624967 |
T |
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| Q |
108 |
ggaatctccatttgcagcttagctttttctgttttcccaagctagaagtttcttcaaatattttttctccttctttgcgacttccaagcaagctgtcacc |
207 |
Q |
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| T |
40624966 |
gaaatctccttttgcagcttagctttctgt-ttttcccaagctagaagtttcttcaagtattttttctccttttttgcaacttccaagcaagctgtcact |
40624868 |
T |
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| Q |
208 |
gactctgatgcacttaatttggaggcctccatctctgctctgatttcagcattctcagtctctaatcttctcacagctccatttgcacggtccacttgac |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40624867 |
gactctgatgcacttaatttggaggcctccatctctgctctgatttcagcattctcagtctctaatcttctcacagctccatttgcacggtccacttgac |
40624768 |
T |
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| Q |
308 |
cactagcttttctcaaagcattctccatctccgagagtctcttcatagttgtgtcctcaagtgcctgtttccctttcttcaatttctgggtctcctctct |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40624767 |
cactagcttttctcaaagcattctccatctccgagagtctcttcatggttgtatcctcaagtgcctgtttccctttcttcaatttctgggtctcctctct |
40624668 |
T |
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| Q |
408 |
atccatccgtaatgttttgagctcagtcaaatcactgcttagcttctttgcggcctgcaatgctttttgatatgcccaccccattctttccgctgcttgg |
507 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| | ||||||||||||||| ||||| |
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| T |
40624667 |
atccatccgtaatgttttgagctcggtcaaatcactgcttagcttcttcgcggcctgcaatgctttctgata-----agcccattctttccgctccttgg |
40624573 |
T |
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| Q |
508 |
cctgtttttccaaatcctttatctgatgaaatatactcactatcacctcatccttctgatcctcagcc |
575 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40624572 |
cctgtttttccaaatcctttatctgatgaaatatactcactatcacttcatccttctgatcctcagcc |
40624505 |
T |
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