View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5906-Insertion-6 (Length: 510)

Name: NF5906-Insertion-6
Description: NF5906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5906-Insertion-6
NF5906-Insertion-6
[»] chr2 (1 HSPs)
chr2 (77-510)||(6619507-6619940)


Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 77 - 510
Target Start/End: Original strand, 6619507 - 6619940
Alignment:
Q  77 ctctccatcatcatcaccatcttcaccagcaacatctgcatcagaatccggaggattatccccagcgacttcatcatcatcatcggaactaacagcacga 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6619507 ctctccatcatcatcaccatcttcaccagcaacatctgcatcagaatccggaggattttccccagcgacttcatcatcatcatcggaactaacagcacga 6619606  T
Q  177 gcaacagcttccaactcctcttgatcttcttcttcgttgatctcttcattgacttgctcttcctccgacaaagagttcaccggttcttcgtcggaagaag 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6619607 gcaacagcttccaactcctcttgatcttcttcttcgttgatctcttcattcacttgctcttcctccgacaaagagttcaccggttcttcgtcggaagaag 6619706  T
Q  277 gttgttgcttcgacagtttcgccatggattcttgaattcaagggtttgtgtttgtgaccggtgaagaatgaaaaaggattgtaatagattaatgtttgaa 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6619707 gttgttgcttcgacagtttcgccatggattcttgaattcaagggtttgtgtttgtgaccggtgaagaatgaaaaaggattgtaataaattaatgtttgaa 6619806  T
Q  377 gtcacactttggtttataagaagttgtgattgcggtgtttatagccgttcgattaaggaagtaaatgtacggttatgacgagataggaaattttttgttt 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6619807 gtcacactttggtttataagaagttgtgattgcggtgtttatagccgttcgattaagaaagtaaatgtacggttatgacgagataggaaattttttgttt 6619906  T
Q  477 cccgccatgggtttggaatgtagtagattttccc 510  Q
    ||||||||||||||||||||||||||||||||||    
T  6619907 cccgccatgggtttggaatgtagtagattttccc 6619940  T

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