View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5906_high_1 (Length: 262)
Name: NF5906_high_1
Description: NF5906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5906_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 47391302 - 47391063
Alignment:
| Q |
8 |
gagcagagatggaggcctccaaattaagtgcatcagagtcggtgacagcttgcttggaagtcgcaaagaaggagaaaaaatatttgaagaaacttctagc |
107 |
Q |
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| T |
47391302 |
gagcagagatggaggcctccaaattaagtgcatcagagtcggtgacagcttgcttggaagtcgcaaagaaggagaaaaaatatttgaagaaacttctagc |
47391203 |
T |
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| Q |
108 |
ttgggaaaacagaaaaagctaagctgcaaatggagatttctgatttgaaagagaagatattagaggattgagaagtgtcagctcagaataagcagcgcca |
207 |
Q |
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| T |
47391202 |
ttgggaaaacagaaaaagctaagctgcaaatggagatttctgatttgaaagggaagatattagaggattgagaagtgtcagctcagaataagcagcgcca |
47391103 |
T |
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| Q |
208 |
aaaagaatctgaggttctctcttcaccccttattttattt |
247 |
Q |
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| T |
47391102 |
aaaagaatctgaggttctctcttcaccccttattttattt |
47391063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 40624828 - 40625066
Alignment:
| Q |
8 |
gagcagagatggaggcctccaaattaagtgcatcagagtcggtgacagcttgcttggaagtcgcaaagaaggagaaaaaatatttgaagaaacttctagc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |
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| T |
40624828 |
gagcagagatggaggcctccaaattaagtgcatcagagtcagtgacagcttgcttggaagttgcaaaaaaggagaaaaaatacttgaagaaacttctagc |
40624927 |
T |
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| Q |
108 |
ttgggaaaacagaaaaagctaagctgcaaatggagatttctgatttgaaagagaagatattagaggattgagaagtgtcagctcagaataagcagcgcca |
207 |
Q |
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| T |
40624928 |
ttgggaaaa-acagaaagctaagctgcaaaaggagatttctgatttgaaagagaagatattagaggatcgagaagtgtcagctcagaataagcagcgcca |
40625026 |
T |
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| Q |
208 |
aaaagaatctgaggttctctcttcaccccttattttattt |
247 |
Q |
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||||||| |||||||||||||||||||||||||||||||| |
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| T |
40625027 |
aaaagaagctgaggttctctcttcaccccttattttattt |
40625066 |
T |
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