View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907-Insertion-10 (Length: 525)
Name: NF5907-Insertion-10
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907-Insertion-10 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 205 - 480
Target Start/End: Complemental strand, 34289525 - 34289250
Alignment:
| Q |
205 |
cttgtgaaagacttttatttggaattgattttagtgttttatcaataatacaaatgacccctcgatttgatttttgctaaaatttaatgcattggtattt |
304 |
Q |
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| T |
34289525 |
cttgtgtaagacttttatttggaattgattttactgttttatcaataatacaaatgacccctcgatttgatttttgctaaaatttaatgcattggtattt |
34289426 |
T |
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| Q |
305 |
atatttttatataagaaaaaattatattaaagtgctaacattacattggtttgagtgtaacaaacttgaatttcttataaaaagtcttaagttcggatct |
404 |
Q |
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| T |
34289425 |
atatttttatataagaaaaaattatattaaagtgccaacattacattggtttgagtgtaacaaacttaaatttcttataaaaagtcttaagttcgaatct |
34289326 |
T |
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| Q |
405 |
tgcgaatggagaaaatgtcgtttcgaaactcggtgttgaattaggttagtgttataattaaggtctgtaatactaa |
480 |
Q |
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| T |
34289325 |
tgcgaatggagaaaatgtcgtttggagagtctgtgttgaattaagttagtgttataattaaggtctgtaacactaa |
34289250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 34289687 - 34289591
Alignment:
| Q |
43 |
gctagatctttgctgacaattccaaaagcttcaactaatttggagttattgatatgttaatgaacctttgaaagtgttgtgtttgtttgaaacaagg |
139 |
Q |
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| T |
34289687 |
gctagatctttgctgacaattccaaaagcttcaactaatttggagttattgatatgttaatgaacctttgaaagtgttgtgtttgtttgaaacaagg |
34289591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 34302074 - 34301978
Alignment:
| Q |
43 |
gctagatctttgctgacaattccaaaagcttcaactaatttggagttattgatatgttaatgaacctttgaaagtgttgtgtttgtttgaaacaagg |
139 |
Q |
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| T |
34302074 |
gctagatctttactgacaattccaaaagcttcaactaatttggagttattgatatgttaatgaacctttgaaagtgttgtgtttgtttgaaacaagg |
34301978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 216 - 398
Target Start/End: Complemental strand, 34301900 - 34301716
Alignment:
| Q |
216 |
cttttatttggaattgattttagtgttttatcaataatacaaatgacccctcgatttgatttttgctaaaattta---atgcattggtatttatattttt |
312 |
Q |
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| T |
34301900 |
cttttatttggaattgattttagtgttttatcaattaaactaacgacccttcaatttgatttttactaagatttatttatgcattcgtatttatattttt |
34301801 |
T |
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| Q |
313 |
atataagaaaaaattatattaaagtgctaacattacattggtttgagtgtaacaaacttgaatttcttataaaaagtcttaagttc |
398 |
Q |
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| T |
34301800 |
atataag-aaaaattatagtgaaatggcaacattgcattggtttgcgtgtaacaagcttgaatcgcttaagaaaagtcttaagttc |
34301716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 34289754 - 34289718
Alignment:
| Q |
9 |
catcaatttacttaaagatgacgtgaaagaagaggct |
45 |
Q |
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| T |
34289754 |
catcaatttacttaaagatgacatgaaagaagaggct |
34289718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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