View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907-Insertion-13 (Length: 437)
Name: NF5907-Insertion-13
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907-Insertion-13 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 8 - 437
Target Start/End: Complemental strand, 23254202 - 23253773
Alignment:
| Q |
8 |
agcattgatatgcaaaattgtaatcgagctttcttatttccttccgttaatgcaggttttatagcatttgagttttttcgtatttcttttgaccgaatac |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23254202 |
agcattgatatgcaaaattgtaatcgagctttcttatttccttccgttaatgcaggttttatagcatttgagttttttcgtatttcttttgaccgaatac |
23254103 |
T |
|
| Q |
108 |
atcttgacaaagtgcccctactcacgtccaatgcttcagaaggatctctaatagttgttcnnnnnnncaaaggaatgtcacgaactcgatcaaggtctac |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
23254102 |
atcttgacaaagtgcccctactcacgtccaatgcttcagaaagatctctaatagttgttctttttttcaaaggaatgtcacgaactcgatcaaggtctac |
23254003 |
T |
|
| Q |
208 |
ctgaactctcttgcgcccacaatttcctgcccttttactagacacatcagcatgcactcctttattctcggcaagtttccaaatacgttgaacataccgt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23254002 |
ttgaactctcttgcgcccacaatttcctgcccttttactagacacatcagcatgcactcctttgttctcggcaagtttccaaatacgttgaacataccgt |
23253903 |
T |
|
| Q |
308 |
atgtgaagtgaaaattgcgacgccactaagctggtcactcctcttttcaattttccatcaacacttttctctaataaagcctcatatattaatcttcttt |
407 |
Q |
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|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23253902 |
atatgaagtgaaaattgcgacgccactaagctggtcattcctcttttcaattttccatcaacacttttctctaataaagcctcatatattaatcttcttt |
23253803 |
T |
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| Q |
408 |
caatattagacaacacctttctccttcgta |
437 |
Q |
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| T |
23253802 |
caatattagacaacacctttctccttcgta |
23253773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 8 - 437
Target Start/End: Complemental strand, 4754856 - 4754428
Alignment:
| Q |
8 |
agcattgatatgcaaaattgtaatcgagctttcttatttccttccgttaatgcaggttttatagcatttgagttttttcgtatttcttttgaccgaatac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4754856 |
agcattgatatgcaaaattgtaatcgagctttcttatttccttccgttaatgcaggttttatagcatttgagttttttcgtatttcttttgaccgaatac |
4754757 |
T |
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| Q |
108 |
atcttgacaaagtgcccctactcacgtccaatgcttcagaaggatctctaatagttgttcnnnnnnncaaaggaatgtcacgaactcgatcaaggtctac |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4754756 |
atcttgacaaagtgcccctactcacgtccaatgcttcagaaagatctctaatagttgttctttttt-caaaggaatgtcacgaactcgatcaaggtctac |
4754658 |
T |
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| Q |
208 |
ctgaactctcttgcgcccacaatttcctgcccttttactagacacatcagcatgcactcctttattctcggcaagtttccaaatacgttgaacataccgt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4754657 |
ttgaactctcttgcgcccacaatttcctgcccttttactagacacattagcatgcactcctttgttctcggcaagtttccaaatacgttgaacataccgt |
4754558 |
T |
|
| Q |
308 |
atgtgaagtgaaaattgcgacgccactaagctggtcactcctcttttcaattttccatcaacacttttctctaataaagcctcatatattaatcttcttt |
407 |
Q |
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|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4754557 |
atatgaagtgaaaattgcgacgccactaagctggtcattcctcttttcaattttccatcaacacttttctctaataaagcctcatatattaatcttcttt |
4754458 |
T |
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| Q |
408 |
caatattagacaacacctttctccttcgta |
437 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
4754457 |
caatattagacaacacctttctccttcgta |
4754428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 8 - 434
Target Start/End: Complemental strand, 42917312 - 42916892
Alignment:
| Q |
8 |
agcattgatatgcaaaattgtaatcgagctttcttatttccttccgttaatgcaggttttatagcatttgagttttttcgtatttcttttgaccgaatac |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42917312 |
agcattgatatgcaaaattgtaatcgagcttt---atttccttccgttaatgcaggttttatagcatttgagttttttcgtatttcttttgaccgaatac |
42917216 |
T |
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| Q |
108 |
atcttgacaaagtgcccctactcacgtccaatgcttcagaaggatctctaatagttgttcnnnnnnncaaaggaatgtcacgaactcgatcaaggtctac |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42917215 |
atcttgacaaagtgcccctactcacgtccaatgcttcagaaagatctctaatagttgttctttttttcaaaggaatgtcacgaactcgatcaaggtctac |
42917116 |
T |
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| Q |
208 |
ctgaactctcttgcgcccacaatttcctgcccttttactagacacatcagcatgcactcctttattctcggcaagtttccaaatacgttgaacataccgt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42917115 |
t---actctcttgcgcccacaatttcctgcccttttactagacacatcagcatgcactcctttgttctcggcaagtttccaaatacgttgaacataccgt |
42917019 |
T |
|
| Q |
308 |
atgtgaagtgaaaattgcgacgccactaagctggtcactcctcttttcaattttccatcaacacttttctctaataaagcctcatatattaatcttcttt |
407 |
Q |
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|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42917018 |
atatgaagtgaaaattgcgacgccactaagctggtcattcctcttttcaattttccatcaacacttttctctaataaagcctcatatattaatcttcttt |
42916919 |
T |
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| Q |
408 |
caatattagacaacacctttctccttc |
434 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
42916918 |
caatattagacaacacctttctccttc |
42916892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 87 - 437
Target Start/End: Original strand, 53533684 - 53534034
Alignment:
| Q |
87 |
gtatttcttttgaccgaatacatcttgacaaagtgcccctactcacgtccaatgcttcagaaggatctctaatagttgttcnnnnnnncaaaggaatgtc |
186 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
53533684 |
gtatttcttttgaccgaatacatcttgacaaagtgcccctactcacgtccaatgcttcagaaagatctctaatagttgttctttttttcaaaggaatgtc |
53533783 |
T |
|
| Q |
187 |
acgaactcgatcaaggtctacctgaactctcttgcgcccacaatttcctgcccttttactagacacatcagcatgcactcctttattctcggcaagtttc |
286 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
53533784 |
acgaactcgatcaaggtctacttgaactctcttgcgcccacaatttcctgcccttttactagacacatcagcatgcactcctttgttctcggcaagtttc |
53533883 |
T |
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| Q |
287 |
caaatacgttgaacataccgtatgtgaagtgaaaattgcgacgccactaagctggtcactcctcttttcaattttccatcaacacttttctctaataaag |
386 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
53533884 |
caaatacgttgaacataccgtatatgaagtgaaaattgcgacgccactaagctggtcattcctcttttcaattttccatcaacacttttctctaataaag |
53533983 |
T |
|
| Q |
387 |
cctcatatattaatcttctttcaatattagacaacacctttctccttcgta |
437 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53533984 |
cctcatatattaatcttctttcaatattagacaacacctttctccttcgta |
53534034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 53535122 - 53535041
Alignment:
| Q |
8 |
agcattgatatgcaaaattgtaatcgagctttcttatttccttccgttaatgcaggttttatagcatttgagttttttcgta |
89 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
53535122 |
agcattgatatgcaaaattgtaatcaagctttcttatttccttcagttaatgcaggttttatagcatttgagttttttcgta |
53535041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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