View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907-Insertion-14 (Length: 373)
Name: NF5907-Insertion-14
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907-Insertion-14 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 9 - 373
Target Start/End: Original strand, 7095870 - 7096234
Alignment:
| Q |
9 |
gattgtgacgacggaaatctgccaatccccttgaatctgcttccctatcttctctctgctgtttcaataggtctcgctgaattttggcggctgtttgtgc |
108 |
Q |
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| T |
7095870 |
gattgtgacgacggaaatctgccaatccccttgaatctgcttccctatcttctctctgctgtttcaattggtctcgctgaattttggcggctgtttgtgc |
7095969 |
T |
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| Q |
109 |
agcaacagcagcagccatgtcagtcatagcctgagccatctgggcgttaacatctccagaagttccagtagtctccggagtacgtcttggaggcattgtt |
208 |
Q |
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| T |
7095970 |
agcaacagcagcagccatgtcagtcatagcctgagccatctgggcgttaacatctccagaagttccagtagtctccggagtacgtcttggaggcattgtt |
7096069 |
T |
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| Q |
209 |
tcctgcaatgcttaaacaagtcattactatatcttcataaatactcatagaaccactatcttaactcacagaaacttggatttctaccactcaaatttaa |
308 |
Q |
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| T |
7096070 |
tcctgcaatgcttaaacaagtcattactctatcttcataaatactcatagaaccactatcctaactcacagaaacttagatttctaccactcaaatttaa |
7096169 |
T |
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| Q |
309 |
atctttaaaaaacctctcaccctcaacattcttgattcacattatccaccacctagatttacctg |
373 |
Q |
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| T |
7096170 |
atctttaaaaaacctctcaccctcaacattcttgattcacattatccaccacctagatttacctg |
7096234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 9 - 332
Target Start/End: Complemental strand, 8375932 - 8375609
Alignment:
| Q |
9 |
gattgtgacgacggaaatctgccaatccccttgaatctgcttccctatcttctctctgctgtttcaataggtctcgctgaattttggcggctgtttgtgc |
108 |
Q |
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| T |
8375932 |
gattgtgacgacggaaatctgccaatccccttgaatctgcttccctatcttctctctgctgtttcaattggtctcgctgaattttggcggctgtttgtgc |
8375833 |
T |
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| Q |
109 |
agcaacagcagcagccatgtcagtcatagcctgagccatctgggcgttaacatctccagaagttccagtagtctccggagtacgtcttggaggcattgtt |
208 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8375832 |
agcagcagcagcagccatgtcagtcatagcctgagccatctgggcgttaacatctccagaagttccaatagtctccggagtacgtcttggaggcattgtt |
8375733 |
T |
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| Q |
209 |
tcctgcaatgcttaaacaagtcattactatatcttcataaatactcatagaaccactatcttaactcacagaaacttggatttctaccactcaaatttaa |
308 |
Q |
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| T |
8375732 |
tcctgcaatgcttaaacaagtcattactatatcttcataaatactcatagaaccactatcttaactcacagaaacttagatttctatcactcaaatttaa |
8375633 |
T |
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| Q |
309 |
atctttaaaaaacctctcaccctc |
332 |
Q |
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|||||||||||||||||||||||| |
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| T |
8375632 |
atctttaaaaaacctctcaccctc |
8375609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 9 - 180
Target Start/End: Complemental strand, 15420529 - 15420358
Alignment:
| Q |
9 |
gattgtgacgacggaaatctgccaatccccttgaatctgcttccctatcttctctctgctgtttcaataggtctcgctgaattttggcggctgtttgtgc |
108 |
Q |
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||||||||||||| ||||| ||||| ||||||||||||||| |||||||||||||||| |||||||| | || ||||||||||||||| | |||||||| |
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| T |
15420529 |
gattgtgacgacgaaaatcagccaagccccttgaatctgctgccctatcttctctctgttgtttcaactgatcccgctgaattttggcgacagtttgtgc |
15420430 |
T |
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| Q |
109 |
agcaacagcagcagccatgtcagtcatagcctgagccatctgggcgttaacatctccagaagttccagtagt |
180 |
Q |
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|||||| || |||||||||||| |||| |||| |||||||| || |||||||| |||| ||||||||||| |
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| T |
15420429 |
agcaaccgccgcagccatgtcactcatcgccttggccatctgagcattaacatcaccaggggttccagtagt |
15420358 |
T |
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