View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907-Insertion-17 (Length: 350)
Name: NF5907-Insertion-17
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907-Insertion-17 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 9 - 350
Target Start/End: Complemental strand, 53689181 - 53688842
Alignment:
| Q |
9 |
gaagggacttctttttctgcaagtaaaagaaattattacaatagagatgatgcggtacgccagtgcctagtattctccattagggacggaggaattccag |
108 |
Q |
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| T |
53689181 |
gaagggacttctttttctgcaagtaaaagaaattattacaatagagatgatgtggtacgccagtgcctagtattctccattagggacggaggaattccag |
53689082 |
T |
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| Q |
109 |
gtgcggcacccacattggaatcggatatagtcggcgtagattgttaaccttttcgagattgattctatgatttcttgcggtaactcatcccattgaacac |
208 |
Q |
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| T |
53689081 |
gtgcggcacccacattggaatcggatatagtcggcgtagattgttaaccttttcgagattgattctatgatttcttgcggtaactcatcccattgaacac |
53688982 |
T |
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| Q |
209 |
ccatttttctttcgttttgttttgggaacggagaatttcttgaccaaaaaatacaccaactggtttttatgaaaaatattttaacaacacagagattcag |
308 |
Q |
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| T |
53688981 |
ccatttttctttcgttttgttttgggaacggagaatttcttgaccaaaaaatacaccaactggtttttatgaaaaatattttaacaacac--agattcag |
53688884 |
T |
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| Q |
309 |
atgtagtccctccggattgaaacccaggtactatgaacatta |
350 |
Q |
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| T |
53688883 |
atgtagtccctccggattgaaacccaggtactatgaacatta |
53688842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 88 - 331
Target Start/End: Complemental strand, 53696164 - 53695924
Alignment:
| Q |
88 |
ttagggacggaggaattccaggtgcggcacccacattggaatcggatatagtcggcgtagattgttaaccttttcgagattgattctatgatttcttgcg |
187 |
Q |
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| T |
53696164 |
ttagggacagaggaattccaggtgcgacagacacatcggaatcgaatatagtcggcgtagattgttaaccttttcgagattgattctatgatttcttgcg |
53696065 |
T |
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| Q |
188 |
gtaactcatcccattgaacacccatttttctttcgttttgttttgggaacggagaatttcttgaccaaaaaatacaccaactggtttttatgaaaaatat |
287 |
Q |
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| T |
53696064 |
gtaactcagcccattcaacacccatttttctttggttttgttttgggaacggaacttttccttgccagaaaata---caactggtttttatgaaaaatat |
53695968 |
T |
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| Q |
288 |
tttaacaacacagagattcagatgtagtccctccggattgaaac |
331 |
Q |
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| T |
53695967 |
tttaacaacacaaagattcagaagtactccctccgaaatgaaac |
53695924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 53705165 - 53705223
Alignment:
| Q |
125 |
ggaatcggatatagtcggcgtagattgttaaccttttcgagattgattctatgatttct |
183 |
Q |
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| T |
53705165 |
ggaatcggatgtaatcggcgtagattgttaacttttgtgagattgtttgtatgatttct |
53705223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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