View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907-Insertion-18 (Length: 315)
Name: NF5907-Insertion-18
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907-Insertion-18 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 9 - 315
Target Start/End: Original strand, 10311419 - 10311725
Alignment:
| Q |
9 |
atcaataaatcacgacagattcatcaattacataccgcttgtccttgtaacaccataaaacagttgggctggatttgatctgtgcctggctaagcatgta |
108 |
Q |
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| T |
10311419 |
atcaataaatcacgacagattcatcaattacataccgcttgtccttgtaacaccataaaacagttgggctggatttgatctgtgcctggctaagcatgta |
10311518 |
T |
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| Q |
109 |
atgaagatttacaatctgcacgtagtagaaacttcacttagtactcaaattgtgctaaccttaaatggagtttccaaaatgtcacactcaaatttatgga |
208 |
Q |
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| T |
10311519 |
atgaagatttacaatctgcacgtagtagaaacttcacttagtactcaaattgtgctaaccttaaatggagtttccaaaatgtcacactcaaatttatgga |
10311618 |
T |
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| Q |
209 |
aaaatatggaatgcaatcaaatcacagtcgattctattaatcgaaggtatgatgacataaaattgcatataatactccacnnnnnnnccccaccaaatta |
308 |
Q |
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| T |
10311619 |
aaaatatggaatgcaatcaaatcacagtcgattctattaatcgaaggtatgatgacataaaattgcatataatactccactttttttccccaccaaatta |
10311718 |
T |
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| Q |
309 |
atatata |
315 |
Q |
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| T |
10311719 |
atatata |
10311725 |
T |
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Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 38435880 - 38435963
Alignment:
| Q |
45 |
gcttgtccttgtaacaccataaaacagttgggctggatttgatctgtgcctggctaagcatgtaatgaagatttacaatctgca |
128 |
Q |
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| T |
38435880 |
gcttttccttataacaccataaaacagttggcctggatttgatttgagccttgctaagcatataatgaagattaacaatctgca |
38435963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 11191771 - 11191691
Alignment:
| Q |
44 |
cgcttgtccttgtaacaccataaaacagttgggctggatttgatctgtgcctggctaagcatgtaatgaagatttacaatc |
124 |
Q |
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| T |
11191771 |
cgcttgtccttgtaacaccattaaacacttagactagatttgatatgtgtttggctaagcatgaaatttagatttacaatc |
11191691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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