View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907-Insertion-20 (Length: 300)
Name: NF5907-Insertion-20
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907-Insertion-20 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 300
Target Start/End: Original strand, 30031040 - 30031331
Alignment:
| Q |
9 |
atctccaaatccatgagcatagctacaagataaacactgaaagaacgtctcttcctcttaattagttcacgggaattccaaacaaacttaagagggttgg |
108 |
Q |
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| T |
30031040 |
atctccaaatccatgagcaaagctataagataaacactgaaagaatgtctcttcctcttgattagttcacgagaattccaaacaaactcaagagggttgg |
30031139 |
T |
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| Q |
109 |
agatatttgattgactcatcttaggtatagatatttgtaagaatgaaatttgattcccccaaagacctttgaactctggtttttgcatttccatcaatga |
208 |
Q |
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| T |
30031140 |
agattactgattggcttactttaggtattggtatttgtaagaaagaaatttgatttccccaaagacctttggactctggtttttgcatttccatcaatga |
30031239 |
T |
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| Q |
209 |
tcggtaacctccaatatttcttgtgttgagcattaccaccgctgtggaatttgctatttttgttttctcattcatctcttccatgtaaagcc |
300 |
Q |
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| T |
30031240 |
tcggtaacctccaatatttcttgtgttgagcattaccactgctgtggaatttgctatttttgttttctcattcatctctttcatgtaaagcc |
30031331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 300
Target Start/End: Original strand, 30047311 - 30047602
Alignment:
| Q |
9 |
atctccaaatccatgagcatagctacaagataaacactgaaagaacgtctcttcctcttaattagttcacgggaattccaaacaaacttaagagggttgg |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||| |
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| T |
30047311 |
atctccaaatccatgagcatagctacaagataaacactgaaagaacgtctcttcctcttgattagttcacgggaattccaaacaaactcaagaggattgg |
30047410 |
T |
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| Q |
109 |
agatatttgattgactcatcttaggtatagatatttgtaagaatgaaatttgattcccccaaagacctttgaactctggtttttgcatttccatcaatga |
208 |
Q |
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| T |
30047411 |
agattactgattgacttactttaggtattggtatttgtaagaaagaaatttgatttccccaaagacctttgcactctggtttttgcatttctgtcaatga |
30047510 |
T |
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| Q |
209 |
tcggtaacctccaatatttcttgtgttgagcattaccaccgctgtggaatttgctatttttgttttctcattcatctcttccatgtaaagcc |
300 |
Q |
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| T |
30047511 |
ttggtaacctccaatatttcttgtgttgagcattaccactgctgtggaatttgctctttttgttttctcattcatctctttcatgtaaagcc |
30047602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 300
Target Start/End: Original strand, 30061652 - 30061943
Alignment:
| Q |
9 |
atctccaaatccatgagcatagctacaagataaacactgaaagaacgtctcttcctcttaattagttcacgggaattccaaacaaacttaagagggttgg |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||| |
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| T |
30061652 |
atctccaaatccatgagcatagctacaagataaacactgaaagaacgtctcttcctcttgattagttcacgggaattccaaacaaactcaagaggattgg |
30061751 |
T |
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| Q |
109 |
agatatttgattgactcatcttaggtatagatatttgtaagaatgaaatttgattcccccaaagacctttgaactctggtttttgcatttccatcaatga |
208 |
Q |
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| T |
30061752 |
agattactgattgacttactttaggtattggtatttgtaagaaagaaatttgatttccccaaagacctttgcactctggtttttgcatttctgtcaatga |
30061851 |
T |
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| Q |
209 |
tcggtaacctccaatatttcttgtgttgagcattaccaccgctgtggaatttgctatttttgttttctcattcatctcttccatgtaaagcc |
300 |
Q |
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| T |
30061852 |
ttggtaacctccaatatttcttgtgttgagcattaccactgctgtggaatttgctctttttgttttctcattcatctctttcatgtaaagcc |
30061943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 300
Target Start/End: Original strand, 30227670 - 30227958
Alignment:
| Q |
12 |
tccaaatccatgagcatagctacaagataaacactgaaagaacgtctcttcctcttaattagttcacgggaattccaaacaaacttaagagggttggaga |
111 |
Q |
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|||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||| |||||| ||||||| |
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| T |
30227670 |
tccaaatccaagagcaaagctatgagataaacactgaaagaacgtctcttcctcttgattagttcacgagtattccaaacaaactcaagaggattggaga |
30227769 |
T |
|
| Q |
112 |
tatttgattgactcatcttaggtatagatatttgtaagaatgaaatttgattcccccaaagacctttgaactctggtttttgcatttccatcaatgatcg |
211 |
Q |
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| |||||||| | |||||||||||||| |||||||||||| ||||||| ||| ||||| ||||||||| |||||||||||||||||||| ||| |||| | |
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| T |
30227770 |
tttttgattggcacatcttaggtataggtatttgtaagaaagaaattttatttccccatagacctttggactctggtttttgcatttccttcactgattg |
30227869 |
T |
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| Q |
212 |
gtaacctccaatatttcttgtgttgagcattaccaccgctgtggaatttgctatttttgttttctcattcatctcttccatgtaaagcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||| ||||||||||||| |||| |
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| T |
30227870 |
gtaacctccaatatttcttgtgttgagcattaccaccgctgtggaatttgatgtttttgtcttctcattcttctcttccatgtatagcc |
30227958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 9 - 300
Target Start/End: Complemental strand, 30221795 - 30221513
Alignment:
| Q |
9 |
atctccaaatccatgagcatagctacaagataaacactgaaagaacgtctcttcctcttaattagttcacgggaattccaaacaaacttaagagggttgg |
108 |
Q |
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|||||||||| || ||||| | ||| |||||||||| |||||| ||||||||||| || |||| | ||| | ||||||||||||| |||||||| |
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| T |
30221795 |
atctccaaattcaagagcaaacctatgagataaacaccgaaagagcgtctcttccttttgattaacttacgagctttccaaacaaactcaagagggtc-- |
30221698 |
T |
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| Q |
109 |
agatatttgattgactcatcttaggtatagatatttgtaagaatgaaatttgattcccccaaagacctttgaactctggtttttgcatttccatcaatga |
208 |
Q |
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|||||| || | ||||||||| | |||||||||||| ||||||||||| |||||||||| |||| |||||||||||||||||||| ||||||| |
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| T |
30221697 |
-------tgattggcttagcttaggtattggtatttgtaagaaagaaatttgatttccccaaagacttttggactctggtttttgcatttccttcaatga |
30221605 |
T |
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| Q |
209 |
tcggtaacctccaatatttcttgtgttgagcattaccaccgctgtggaatttgctatttttgttttctcattcatctcttccatgtaaagcc |
300 |
Q |
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| |||||||| ||||||||||||||||||||||||| || ||||||||||||| | ||||||| ||||||||||| || |||||||| |||| |
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| T |
30221604 |
ttggtaaccttcaatatttcttgtgttgagcattactacagctgtggaatttgatttttttgtcttctcattcatttcctccatgtatagcc |
30221513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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