View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907-Insertion-21 (Length: 264)
Name: NF5907-Insertion-21
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907-Insertion-21 |
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| [»] scaffold0041 (4 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 146; Significance: 5e-77; HSPs: 4)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 95676 - 95527
Alignment:
| Q |
9 |
aaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatctcatatcttcaactctacat |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
95676 |
aaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatcttatatcttcaactctacat |
95577 |
T |
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| Q |
109 |
ggaatgaaagatggaattttggagtaagcactgaaattcaccggctcaca |
158 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
95576 |
ggaatgaaagatggaattttggagtaagcactgaaattcaccggctcaca |
95527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 87660 - 87511
Alignment:
| Q |
9 |
aaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatctcatatcttcaactctacat |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
87660 |
aaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatcttatagcttcaactctacat |
87561 |
T |
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| Q |
109 |
ggaatgaaagatggaattttggagtaagcactgaaattcaccggctcaca |
158 |
Q |
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| T |
87560 |
ggaatgaaagacggaattttggagtaagaactgaaattcacaggctcaca |
87511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 87474 - 87405
Alignment:
| Q |
159 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgccatagctgagggtccacactc |
228 |
Q |
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| T |
87474 |
ctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactc |
87405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 95490 - 95440
Alignment:
| Q |
159 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgcca |
209 |
Q |
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| T |
95490 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgcca |
95440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 9 - 158
Target Start/End: Original strand, 40870606 - 40870755
Alignment:
| Q |
9 |
aaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatctcatatcttcaactctacat |
108 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40870606 |
aaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatcttatatcttcaactctacat |
40870705 |
T |
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| Q |
109 |
ggaatgaaagatggaattttggagtaagcactgaaattcaccggctcaca |
158 |
Q |
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| T |
40870706 |
ggaatgaaagatggaattttggagtaagcactgaaattcaccggctcaca |
40870755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 9 - 158
Target Start/End: Original strand, 40878623 - 40878772
Alignment:
| Q |
9 |
aaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatctcatatcttcaactctacat |
108 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
40878623 |
aaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatcttatagcttcaactctacat |
40878722 |
T |
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| Q |
109 |
ggaatgaaagatggaattttggagtaagcactgaaattcaccggctcaca |
158 |
Q |
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| T |
40878723 |
ggaatgaaagacggaattttggagtaagaactgaaattcacaggctcaca |
40878772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 40878809 - 40878878
Alignment:
| Q |
159 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgccatagctgagggtccacactc |
228 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40878809 |
ctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactc |
40878878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 40870792 - 40870842
Alignment:
| Q |
159 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgcca |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40870792 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgcca |
40870842 |
T |
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