View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5907-Insertion-22 (Length: 204)

Name: NF5907-Insertion-22
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5907-Insertion-22
NF5907-Insertion-22
[»] chr8 (8 HSPs)
chr8 (9-148)||(8444497-8444636)
chr8 (9-147)||(24503779-24503917)
chr8 (9-141)||(45540046-45540178)
chr8 (10-148)||(13090025-13090163)
chr8 (10-148)||(4034539-4034677)
chr8 (9-109)||(9932343-9932443)
chr8 (9-97)||(25582828-25582916)
chr8 (9-109)||(13781090-13781190)
[»] chr5 (4 HSPs)
chr5 (9-148)||(19021114-19021253)
chr5 (9-148)||(22639283-22639422)
chr5 (9-122)||(26369182-26369295)
chr5 (10-127)||(22580642-22580759)
[»] chr2 (7 HSPs)
chr2 (9-148)||(6764144-6764283)
chr2 (9-147)||(12410512-12410650)
chr2 (9-148)||(37647689-37647828)
chr2 (9-145)||(12422574-12422710)
chr2 (18-148)||(27271372-27271502)
chr2 (10-148)||(11031502-11031640)
chr2 (9-106)||(2380868-2380965)
[»] chr4 (15 HSPs)
chr4 (9-148)||(36651978-36652117)
chr4 (9-148)||(42718294-42718433)
chr4 (9-148)||(43499021-43499160)
chr4 (9-148)||(7743296-7743435)
chr4 (12-148)||(39059961-39060097)
chr4 (9-148)||(9896743-9896882)
chr4 (10-148)||(37870896-37871034)
chr4 (12-89)||(23106861-23106938)
chr4 (9-109)||(40850567-40850667)
chr4 (9-97)||(47590702-47590790)
chr4 (9-109)||(56024798-56024898)
chr4 (85-148)||(23108098-23108161)
chr4 (9-108)||(48640488-48640587)
chr4 (168-200)||(28359239-28359271)
chr4 (64-128)||(50771543-50771607)
[»] scaffold0300 (1 HSPs)
scaffold0300 (9-148)||(9301-9440)
[»] chr7 (8 HSPs)
chr7 (9-148)||(9942839-9942978)
chr7 (9-148)||(1031948-1032087)
chr7 (10-120)||(40871552-40871662)
chr7 (9-148)||(17194129-17194267)
chr7 (9-109)||(40858267-40858367)
chr7 (79-142)||(15669415-15669478)
chr7 (58-142)||(19323948-19324032)
chr7 (168-200)||(27324444-27324476)
[»] chr1 (12 HSPs)
chr1 (9-148)||(4532324-4532463)
chr1 (9-148)||(33936151-33936290)
chr1 (9-142)||(31911795-31911928)
chr1 (10-148)||(19228137-19228274)
chr1 (10-148)||(34549075-34549213)
chr1 (9-109)||(20505398-20505498)
chr1 (9-97)||(26676664-26676752)
chr1 (9-109)||(33676743-33676843)
chr1 (9-122)||(27007634-27007747)
chr1 (9-87)||(28756725-28756803)
chr1 (9-109)||(46731822-46731922)
chr1 (9-47)||(51534715-51534753)
[»] chr6 (4 HSPs)
chr6 (9-144)||(24393632-24393767)
chr6 (10-148)||(12912498-12912636)
chr6 (9-144)||(18972857-18972993)
chr6 (9-97)||(6029095-6029183)
[»] scaffold0074 (1 HSPs)
scaffold0074 (9-144)||(23515-23651)
[»] scaffold0041 (1 HSPs)
scaffold0041 (10-120)||(94620-94730)
[»] chr3 (2 HSPs)
chr3 (9-109)||(10436678-10436778)
chr3 (9-109)||(20406132-20406232)


Alignment Details
Target: chr8 (Bit Score: 124; Significance: 5e-64; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 8444497 - 8444636
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8444497 aactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgagcattcctttcaaggcagatcacccacacacaagatagccaaataaga 8444596  T
Q  109 ttaagagttgagcgtttgctgttagaaaagccgctaaagg 148  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  8444597 ttaagagttgagcgtttgctgttagagaagccgctaaagg 8444636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 9 - 147
Target Start/End: Complemental strand, 24503917 - 24503779
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| |||||||| || ||||||||||||||||||||||||||||||    
T  24503917 aactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgaacattactttcaagacaaatcacccacacacaagatagccaaataaga 24503818  T
Q  109 ttaagagttgagcgtttgctgttagaaaagccgctaaag 147  Q
    |||||||||||||||||||||||||| |||| |||||||    
T  24503817 ttaagagttgagcgtttgctgttagagaagcagctaaag 24503779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 45540178 - 45540046
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||| | |||||||| ||||||||  |||||||||||||||||||||| |||||||||    
T  45540178 aactttatctaacaattgattaaaagaagcttctttttggtgaaatgttcgagcattcctttcaagctagatcacccacacacaagatagacaaataaga 45540079  T
Q  109 ttaagagttgagcgtttgctgttagaaaagccg 141  Q
    |||||||||||| ||||| ||||||| ||||||    
T  45540078 ttaagagttgagagtttgttgttagagaagccg 45540046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 10 - 148
Target Start/End: Original strand, 13090025 - 13090163
Alignment:
Q  10 actttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 109  Q
    |||||||||| |||||||||||||||| ||||||||| |||||| || ||| |||| |||||||| || |||||||||||||| |||||||||||||| |    
T  13090025 actttatctagcaattgattaaaagaagcttctttttggtgaaagatccgatcattcctttcaagccaaatcacccacacacatgatagccaaataaggt 13090124  T
Q  110 taagagttgagcgtttgctgttagaaaagccgctaaagg 148  Q
    |||||| |||| ||||| |||| ||||| ||| ||||||    
T  13090125 taagagctgagtgtttgttgtttgaaaaaccgataaagg 13090163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 10 - 148
Target Start/End: Original strand, 4034539 - 4034677
Alignment:
Q  10 actttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 109  Q
    |||||||| | |||||||||||||||| ||||||||| |||||| ||  || |||| |||||||| || |||||||||||||| |||||||||||||| |    
T  4034539 actttatccagcaattgattaaaagaagcttctttttggtgaaagatctgatcattcctttcaagccaaatcacccacacacatgatagccaaataaggt 4034638  T
Q  110 taagagttgagcgtttgctgttagaaaagccgctaaagg 148  Q
    |||||| |||| ||||| |||| ||||| ||| ||||||    
T  4034639 taagagctgagtgtttgttgtttgaaaaaccgataaagg 4034677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 9932343 - 9932443
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    ||||||||||| |||||||||||  ||| ||||| ||| |||||| |  |||||||| |||||||| || ||||||||||||||||||| ||| ||||||    
T  9932343 aactttatctagcaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagataaccatataaga 9932442  T
Q  109 t 109  Q
    |    
T  9932443 t 9932443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 25582828 - 25582916
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagata 97  Q
    ||||||||||| |||||||||||  ||| ||||| ||| |||||| |  |||||||| |||||||| || |||||||||||||||||||    
T  25582828 aactttatctagcaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagata 25582916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 13781090 - 13781190
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    |||||||| |||||||| | |||  ||| ||||| ||| |||||| |  |||||||| |||||||| || |||| |||||||||||||| ||| ||||||    
T  13781090 aactttatttaacaattaagtaatcgaagcttctatttggtgaaaaacccgagcattcctttcaagccaaatcatccacacacaagataaccatataaga 13781189  T
Q  109 t 109  Q
    |    
T  13781190 t 13781190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 5e-64; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 19021253 - 19021114
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19021253 aactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgagcatttctttcaagccagatcacccacacacaagatagccaaataaga 19021154  T
Q  109 ttaagagttgagcgtttgctgttagaaaagccgctaaagg 148  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  19021153 ttaagagttgagcgtttgctgttagagaagccgctaaagg 19021114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 22639422 - 22639283
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  22639422 aactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgagcattcctttcaagccagatcacccacacacaagatagccaaataaga 22639323  T
Q  109 ttaagagttgagcgtttgctgttagaaaagccgctaaagg 148  Q
    |||||||  ||||||||||||||||| |||||||||||||    
T  22639322 ttaagagaagagcgtttgctgttagagaagccgctaaagg 22639283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 26369182 - 26369295
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    ||||||||||| |||||||||||  ||| ||||| ||| |||||| |  |||||||| |||||||| || ||||||||||||||||||| ||| ||||||    
T  26369182 aactttatctagcaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagataaccatataaga 26369281  T
Q  109 ttaagagttgagcg 122  Q
    | || ||| |||||    
T  26369282 tgaaaagtggagcg 26369295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 22580642 - 22580759
Alignment:
Q  10 actttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 109  Q
    |||||||||| |||||||||||| |||  || | |||  ||||| |  ||| |||| |||||||| || ||||||| ||||||||||||||| |||||||    
T  22580642 actttatctagcaattgattaaacgaagtttatatttgttgaaagacccgaacattcctttcaagccaaatcacccgcacacaagatagccatataagat 22580741  T
Q  110 taagagttgagcgtttgc 127  Q
    ||| ||||||||| ||||    
T  22580742 taaaagttgagcggttgc 22580759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 5e-64; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 6764283 - 6764144
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6764283 aactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgagcatttctttcaagccagatcacccacacacaagatagccaaataaga 6764184  T
Q  109 ttaagagttgagcgtttgctgttagaaaagccgctaaagg 148  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  6764183 ttaagagttgagcgtttgctgttagagaagccgctaaagg 6764144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 9 - 147
Target Start/End: Complemental strand, 12410650 - 12410512
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  12410650 aactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgagcatttctttcaagccatatcacccacacacaagatagccaaataaga 12410551  T
Q  109 ttaagagttgagcgtttgctgttagaaaagccgctaaag 147  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  12410550 ttaagagttgagcgtttgctgttagagaagccgctaaag 12410512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 37647828 - 37647689
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  37647828 aactttatctaacaattgattaaaagaagcttctttttggtgaaatatacgagcatttctttcaagccagatcacccacacacaggatagccaaataaga 37647729  T
Q  109 ttaagagttgagcgtttgctgttagaaaagccgctaaagg 148  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  37647728 ttaagagttgagcgtttgctgttagagaagccgctaaagg 37647689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 9 - 145
Target Start/End: Complemental strand, 12422710 - 12422574
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  12422710 aactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgagcatttctttcaagccatatcacccacacacaagatagccaaataaga 12422611  T
Q  109 ttaagagttgagcgtttgctgttagaaaagccgctaa 145  Q
    |||||||||||||||||||||||||| |||| |||||    
T  12422610 ttaagagttgagcgtttgctgttagagaagctgctaa 12422574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 27271502 - 27271372
Alignment:
Q  18 taacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagtt 117  Q
    ||||||||||||||||||| ||||||||| ||||||||| ||||||||||||| ||| || |||||||||||||||| ||| |||||||||||||||| |    
T  27271502 taacaattgattaaaagaagcttctttttggtgaaatattcgagcatttcttttaagccaaatcacccacacacaagttaggcaaataagattaagagct 27271403  T
Q  118 gagcgtttgctgttagaaaagccgctaaagg 148  Q
    |||||||||||||||||||||||||||||||    
T  27271402 gagcgtttgctgttagaaaagccgctaaagg 27271372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 10 - 148
Target Start/End: Complemental strand, 11031640 - 11031502
Alignment:
Q  10 actttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 109  Q
    |||||||||| |||||||||||||||| ||||||||| |||||| || |||||||| |||||||| || |||||||||||||| |||||||||||||| |    
T  11031640 actttatctagcaattgattaaaagaagcttctttttggtgaaagatccgagcattcctttcaagtcaaatcacccacacacatgatagccaaataaggt 11031541  T
Q  110 taagagttgagcgtttgctgttagaaaagccgctaaagg 148  Q
    |||||| |||| ||||| |||| ||||| ||||||||||    
T  11031540 taagagctgagtgtttgttgtttgaaaaaccgctaaagg 11031502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 2380868 - 2380965
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataa 106  Q
    ||||||||||| |||||||||||  ||| ||||| ||| ||||||  |  ||||||| |||||||| || ||||||||||||||||||| ||| ||||    
T  2380868 aactttatctagcaattgattaattgaagcttctgtttggtgaaaagtctgagcattcctttcaagccaaatcacccacacacaagataaccatataa 2380965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 1e-61; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 36651978 - 36652117
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36651978 aactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgagcatttctttcaagccagatcacccacacacaagatagccaaataaga 36652077  T
Q  109 ttaagagttgagcgtttgctgttagaaaagccgctaaagg 148  Q
    |||||||||||| ||||||||||||| |||||||||||||    
T  36652078 ttaagagttgagtgtttgctgttagagaagccgctaaagg 36652117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 42718433 - 42718294
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    ||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42718433 aactttatctaacaattgattaaaataagcttctttttggtgaaatatgcgagcatttctttcaagccagatcacccacacacaagatagccaaataaga 42718334  T
Q  109 ttaagagttgagcgtttgctgttagaaaagccgctaaagg 148  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  42718333 ttaagagttgagcgtttgttgttagaaaagccgctaaagg 42718294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 43499160 - 43499021
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  43499160 aactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgagcatttctttcacgccagatcacccacacacaagatagccaaataaga 43499061  T
Q  109 ttaagagttgagcgtttgctgttagaaaagccgctaaagg 148  Q
    ||||| |||||||||||||| ||||| |||||||||||||    
T  43499060 ttaagtgttgagcgtttgctattagagaagccgctaaagg 43499021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 7743435 - 7743296
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    |||||||| ||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  7743435 aactttatttaacaattgattaaaagaagcttctttttggtggaatatgcgagcatttctttcaagccagatcacccacacgcaagatagccaaataaga 7743336  T
Q  109 ttaagagttgagcgtttgctgttagaaaagccgctaaagg 148  Q
    |||||||||||||||||||||||||| |||||| ||||||    
T  7743335 ttaagagttgagcgtttgctgttagagaagccgttaaagg 7743296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 39059961 - 39060097
Alignment:
Q  12 tttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagatta 111  Q
    ||||||||||||||||||||||||| ||||||||| ||| ||||| |||||||| |||||||| ||||||||||||||||||||||| ||||||||||||    
T  39059961 tttatctaacaattgattaaaagaagcttctttttggtggaatattcgagcattcctttcaagtcagatcacccacacacaagatagtcaaataagatta 39060060  T
Q  112 agagttgagcgtttgctgttagaaaagccgctaaagg 148  Q
    |||| ||||||||||||||||||||||||||||||||    
T  39060061 agagctgagcgtttgctgttagaaaagccgctaaagg 39060097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 9896743 - 9896882
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    ||||||||||||||||||||||||| || ||||||||| ||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  9896743 aactttatctaacaattgattaaaataagcttctttttggtggaatattcgagcattcctttcaagccagatcacccacacacaagatagccaaataaga 9896842  T
Q  109 ttaagagttgagcgtttgctgttagaaaagccgctaaagg 148  Q
    ||||||| | ||||||||| |||||| ||||| |||||||    
T  9896843 ttaagagattagcgtttgccgttagagaagccactaaagg 9896882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 10 - 148
Target Start/End: Original strand, 37870896 - 37871034
Alignment:
Q  10 actttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 109  Q
    |||||||||| |||||||||||||||| ||||||||| |||||| || ||| |||| |||||||| || ||||| |||||||| |||||||||||||| |    
T  37870896 actttatctagcaattgattaaaagaagcttctttttggtgaaagatccgatcattcctttcaagccaaatcactcacacacatgatagccaaataaggt 37870995  T
Q  110 taagagttgagcgtttgctgttagaaaagccgctaaagg 148  Q
    |||||| |||| ||||| |||| ||||| ||| ||||||    
T  37870996 taagagctgagtgtttgttgtttgaaaaaccgataaagg 37871034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 23106861 - 23106938
Alignment:
Q  12 tttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacac 89  Q
    |||||||| |||||||||||||||| ||||||||| |||||| || |||||||| |||||||| || |||||||||||    
T  23106861 tttatctagcaattgattaaaagaagcttctttttggtgaaagatccgagcattcctttcaagccaaatcacccacac 23106938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 40850667 - 40850567
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    ||||||||||| |||||||||||  ||| ||||| ||| |||||| || ||||||||  ||||||| || ||||||||||||||||||| ||| ||||||    
T  40850667 aactttatctagcaattgattaatcgaagcttctgtttggtgaaaaatccgagcattcatttcaagccaaatcacccacacacaagataaccatataaga 40850568  T
Q  109 t 109  Q
    |    
T  40850567 t 40850567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 47590702 - 47590790
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagata 97  Q
    ||||||||||| |||||||||||  ||||||||| ||| |||||| |  |||||||| |||||||| || |||||||||||||||||||    
T  47590702 aactttatctagcaattgattaatcgaaacttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagata 47590790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 56024898 - 56024798
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    ||||||||||| |||||||||||  ||| ||||| ||| |||||| |  |||||||| |||||||| || |||| |||||||||||||| ||| ||||||    
T  56024898 aactttatctagcaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcaaccacacacaagataaccatataaga 56024799  T
Q  109 t 109  Q
    |    
T  56024798 t 56024798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 85 - 148
Target Start/End: Original strand, 23108098 - 23108161
Alignment:
Q  85 cacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaagccgctaaagg 148  Q
    |||||||| |||||||||||||| ||||||| |||| |||||||||| ||||| ||||||||||    
T  23108098 cacacacatgatagccaaataaggttaagagctgagtgtttgctgtttgaaaaaccgctaaagg 23108161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 48640587 - 48640488
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    ||||||||||| || ||||||||  ||| ||||| ||| |||||| |  ||||||||  ||||||| || ||||||||||||||||||| ||| ||||||    
T  48640587 aactttatctagcagttgattaatcgaagcttctgtttggtgaaaaacccgagcattcatttcaagccaaatcacccacacacaagataaccatataaga 48640488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 200
Target Start/End: Complemental strand, 28359271 - 28359239
Alignment:
Q  168 taaaacaaaaacctcaaaatccacctgatacat 200  Q
    |||||||| ||||||||||||||||||||||||    
T  28359271 taaaacaacaacctcaaaatccacctgatacat 28359239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 50771607 - 50771543
Alignment:
Q  64 tttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgct 128  Q
    |||||||| || || ||||||||||||||||| ||||| || ||||||| || |||||| |||||    
T  50771607 tttctttctagccaaatcacccacacacaagaaagccatatgagattaaaagctgagcggttgct 50771543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 9440 - 9301
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    ||||||||||||||||||||||||| || ||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  9440 aactttatctaacaattgattaaaataagcttctttttggtgaaatatgcgagcattcctttcaagccagatcacccacacacaagatagccaaataaga 9341  T
Q  109 ttaagagttgagcgtttgctgttagaaaagccgctaaagg 148  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  9340 ttaagagttgagcgtttgctgttagagaagctgctaaagg 9301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 9942839 - 9942978
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  9942839 aactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcaagcatttctttcaagccagatcacccacacacaagatagtcaaataaga 9942938  T
Q  109 ttaagagttgagcgtttgctgttagaaaagccgctaaagg 148  Q
    |||||||||||| ||||||||| ||| |||||||||||||    
T  9942939 ttaagagttgagtgtttgctgtcagagaagccgctaaagg 9942978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 1032087 - 1031948
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    |||||||||||| ||||||||||||||| ||||||||| ||||||||| ||||| || ||||||||  ||||||||||||||||| ||||||||||||||    
T  1032087 aactttatctaataattgattaaaagaagcttctttttggtgaaatattcgagcgttcctttcaagctagatcacccacacacaatatagccaaataaga 1031988  T
Q  109 ttaagagttgagcgtttgctgttagaaaagccgctaaagg 148  Q
    || ||||||||||||||| ||||||| |||||||||||||    
T  1031987 ttcagagttgagcgtttgttgttagagaagccgctaaagg 1031948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 40871552 - 40871662
Alignment:
Q  10 actttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 109  Q
    |||||||||| |||||||||||||||| ||||||||| |||||| || ||| |||| |||||||| || |||||||||||| | |||||||||||||| |    
T  40871552 actttatctagcaattgattaaaagaagcttctttttggtgaaagatccgatcattcctttcaagccaaatcacccacacaaatgatagccaaataaggt 40871651  T
Q  110 taagagttgag 120  Q
    |||||| ||||    
T  40871652 taagagctgag 40871662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 17194129 - 17194267
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    ||||||||||| |||||||||||||||| ||| || || || ||| ||   |||||| |||||||| || ||||| ||||||||||||| |||||||||     
T  17194129 aactttatctagcaattgattaaaagaagctttttattggt-aaagatttaagcattcctttcaagtcaaatcactcacacacaagataaccaaataagg 17194227  T
Q  109 ttaagagttgagcgtttgctgttagaaaagccgctaaagg 148  Q
    ||||||||| || || | ||||||||||| ||||||||||    
T  17194228 ttaagagttaagtgtctactgttagaaaaaccgctaaagg 17194267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 40858267 - 40858367
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    ||||||||||| |||||||||||  ||| ||||| ||| |||||| |  ||||||||  ||||||| || ||||||||||||||||||| ||| ||||||    
T  40858267 aactttatctagcaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcatttcaagccaaatcacccacacacaagataaccatataaga 40858366  T
Q  109 t 109  Q
    |    
T  40858367 t 40858367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 142
Target Start/End: Complemental strand, 15669478 - 15669415
Alignment:
Q  79 atcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaagccgc 142  Q
    ||||||||||||||||| ||||| || ||||||| ||||||||| ||||| || ||||| ||||    
T  15669478 atcacccacacacaagaaagccatatgagattaaaagttgagcggttgcttttggaaaacccgc 15669415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 19324032 - 19323948
Alignment:
Q  58 cgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaagccgc 142  Q
    ||||| |||||||| |  || ||||||||||||||||| ||||| || || |||| ||||||||| ||||| || ||||| ||||    
T  19324032 cgagcgtttctttctatccaaatcacccacacacaagaaagccatatgaggttaaaagttgagcggttgcttttggaaaacccgc 19323948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 200
Target Start/End: Complemental strand, 27324476 - 27324444
Alignment:
Q  168 taaaacaaaaacctcaaaatccacctgatacat 200  Q
    |||||||| ||||||||||||||||||||||||    
T  27324476 taaaacaacaacctcaaaatccacctgatacat 27324444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 4532324 - 4532463
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    ||||||||||||||||||||||||||||  |||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||    
T  4532324 aactttatctaacaattgattaaaagaagtttctttttggtgaaatatgcgagcattcctttcaagtcagatcacccacacacaagatagtcaaataaga 4532423  T
Q  109 ttaagagttgagcgtttgctgttagaaaagccgctaaagg 148  Q
    |||||||||||||||||||||||||| ||||||| |||||    
T  4532424 ttaagagttgagcgtttgctgttagagaagccgccaaagg 4532463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 33936290 - 33936151
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    |||||||| || |||||||||||| ||| |||| |||| |||||| || |||||||| |||||||| || ||||||||||||||||||||| ||||||||    
T  33936290 aactttatttagcaattgattaaacgaatcttcattttggtgaaagatccgagcattcctttcaagccaaatcacccacacacaagatagctaaataaga 33936191  T
Q  109 ttaagagttgagcgtttgctgttagaaaagccgctaaagg 148  Q
    |||||||||| | |||||||||||||||| ||||||||||    
T  33936190 ttaagagttgtgtgtttgctgttagaaaaaccgctaaagg 33936151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 31911795 - 31911928
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    ||||||||||| |||||||||||| ||||||||||||| |||||| ||  ||||||| |||||||| || |||||||| |||||||||||||||||||||    
T  31911795 aactttatctagcaattgattaaacgaaacttctttttggtgaaagatctgagcattcctttcaagtcaaatcacccatacacaagatagccaaataaga 31911894  T
Q  109 ttaagagttgagcgtttgctgttagaaaagccgc 142  Q
    |||| || |||||| ||||| ||||| |||||||    
T  31911895 ttaaaagctgagcggttgctattagagaagccgc 31911928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 10 - 148
Target Start/End: Original strand, 19228137 - 19228274
Alignment:
Q  10 actttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 109  Q
    |||||||||| |||||||||||||||| ||||||||| |||||| || |||||||| |||||||| || |||||||||||||| ||||||||||| || |    
T  19228137 actttatctagcaattgattaaaagaagcttctttttggtgaaagatccgagcattcctttcaagccaaatcacccacacacatgatagccaaat-aggt 19228235  T
Q  110 taagagttgagcgtttgctgttagaaaagccgctaaagg 148  Q
    |||||| |||| ||||| |||| ||||| ||||||||||    
T  19228236 taagagctgagtgtttgttgtttgaaaaaccgctaaagg 19228274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 10 - 148
Target Start/End: Complemental strand, 34549213 - 34549075
Alignment:
Q  10 actttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 109  Q
    |||||||||| |||||||||||||||| ||||||||| || ||| || | | |||| |||||||| || |||||||||||||| |||||||||||||| |    
T  34549213 actttatctagcaattgattaaaagaagcttctttttggttaaagatcctatcattcctttcaagccatatcacccacacacatgatagccaaataaggt 34549114  T
Q  110 taagagttgagcgtttgctgttagaaaagccgctaaagg 148  Q
    |||||| |||| ||||| |||| ||||| ||| ||||||    
T  34549113 taagagctgagtgtttgttgtttgaaaaaccgataaagg 34549075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 20505498 - 20505398
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    ||||||||||| |||||||||||  ||| ||||| ||| |||||| |  |||||||| |||||||| || ||||||||||||||||||| ||| ||||||    
T  20505498 aactttatctagcaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagataaccatataaga 20505399  T
Q  109 t 109  Q
    |    
T  20505398 t 20505398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 26676752 - 26676664
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagata 97  Q
    ||||||||||| |||||||||||  ||| ||||| ||| |||||| |  |||||||| |||||||| || |||||||||||||||||||    
T  26676752 aactttatctagcaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagata 26676664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 33676743 - 33676843
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    ||||||||||| |||||||||||  ||||||||| ||| |||||| |   ||||||| |||||||| || ||||| ||||||||||||| ||| ||||||    
T  33676743 aactttatctagcaattgattaatcgaaacttctgtttggtgaaaaacctgagcattcctttcaagccaaatcactcacacacaagataaccatataaga 33676842  T
Q  109 t 109  Q
    |    
T  33676843 t 33676843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 27007634 - 27007747
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    |||| |||||| |||||||||||| |||  |||||||| |||||| |  ||| ||||  ||||||| || |||||||||||||||||||| || |||||     
T  27007634 aactctatctagcaattgattaaacgaagattctttttggtgaaagacccgaacattcatttcaagccaaatcacccacacacaagatagtcatataagt 27007733  T
Q  109 ttaagagttgagcg 122  Q
    |||| || ||||||    
T  27007734 ttaaaagctgagcg 27007747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 28756725 - 28756803
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccac 87  Q
    |||||||||||||||||||||||  ||| ||||| ||| |||||| |  |||||||| |||||||| || |||||||||    
T  28756725 aactttatctaacaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccac 28756803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 46731922 - 46731822
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    ||||||||||| |||||||||||  ||| ||| | ||| |||||| |  |||  ||| |||||||| || ||||||||||||||||||| ||| ||||||    
T  46731922 aactttatctagcaattgattaatcgaagcttttgtttggtgaaaaacccgattattcctttcaagccaaatcacccacacacaagataaccatataaga 46731823  T
Q  109 t 109  Q
    |    
T  46731822 t 46731822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 51534715 - 51534753
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttcttttta 47  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  51534715 aactttatctaacaattgattaaaagaagtttcttttta 51534753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 6e-33; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 24393767 - 24393632
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    ||||||||| |||||||||||||| ||| ||||||||| |||||| || | |||||| |||||| | || ||||||||||||||||||||||||||||||    
T  24393767 aactttatcaaacaattgattaaacgaagcttctttttggtgaaagattccagcattcctttcatgccaaatcacccacacacaagatagccaaataaga 24393668  T
Q  109 ttaagagttgagcgtttgctgttagaaaagccgcta 144  Q
    |||||||  ||| ||||| |||||||||| ||||||    
T  24393667 ttaagagcggagtgtttgttgttagaaaaaccgcta 24393632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 10 - 148
Target Start/End: Original strand, 12912498 - 12912636
Alignment:
Q  10 actttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 109  Q
    |||||||||| |||||||||||||||| ||||||||| |||||| || | | |||| |||||||| || |||||||||||||| |||||||||||||| |    
T  12912498 actttatctagcaattgattaaaagaagcttctttttggtgaaagatccaatcattcctttcaagccatatcacccacacacatgatagccaaataaggt 12912597  T
Q  110 taagagttgagcgtttgctgttagaaaagccgctaaagg 148  Q
    |||||| |||| ||||| |||| ||||| ||| ||||||    
T  12912598 taagagctgagtgtttgttgtttgaaaaaccgataaagg 12912636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 18972857 - 18972993
Alignment:
Q  9 aactttatctaa-caattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataag 107  Q
    ||||||||| || |||||||||||| ||| ||||||||| |||||| ||  ||||||| |||||||| || |||||||||||||||||||||||||||||    
T  18972857 aactttatcaaagcaattgattaaacgaagcttctttttggtgaaagattagagcattcctttcaagccaaatcacccacacacaagatagccaaataag 18972956  T
Q  108 attaagagttgagcgtttgctgttagaaaagccgcta 144  Q
    ||||||||  |||  |||| |||||||||| ||||||    
T  18972957 attaagagcggagtttttgttgttagaaaaaccgcta 18972993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 6029183 - 6029095
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagata 97  Q
    ||||||||||| |||||||||||  ||| ||||| ||| |||||| |  |||||||| |||||||| || |||||||| ||||||||||    
T  6029183 aactttatctagcaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccaaacacaagata 6029095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 23651 - 23515
Alignment:
Q  9 aactttatctaa-caattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataag 107  Q
    ||||||||| || |||||||||||| ||| ||||||||| |||||| ||  ||||||| |||||||| || |||||||||||||||||||||||||||||    
T  23651 aactttatcaaagcaattgattaaacgaagcttctttttggtgaaagatttgagcattcctttcaagccaaatcacccacacacaagatagccaaataag 23552  T
Q  108 attaagagttgagcgtttgctgttagaaaagccgcta 144  Q
    ||||||||  |||  |||| |||||||||| ||||||    
T  23551 attaagagcggagtttttgttgttagaaaaaccgcta 23515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 94730 - 94620
Alignment:
Q  10 actttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 109  Q
    |||||||||| |||||||||||||||| ||||||||| |||||| || ||| |||| |||||||| || |||||||||||| | |||||||||||||| |    
T  94730 actttatctagcaattgattaaaagaagcttctttttggtgaaagatccgatcattcctttcaagccaaatcacccacacaaatgatagccaaataaggt 94631  T
Q  110 taagagttgag 120  Q
    |||||| ||||    
T  94630 taagagctgag 94620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 10436678 - 10436778
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    ||||||||||| |||||||||||  ||| ||||| ||| |||||| |  |||||||| |||||||| || ||||||||||||||||||| ||| ||||||    
T  10436678 aactttatctagcaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagataaccatataaga 10436777  T
Q  109 t 109  Q
    |    
T  10436778 t 10436778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 20406232 - 20406132
Alignment:
Q  9 aactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 108  Q
    ||||||||||| |||||| ||||  ||| ||||| ||| |||||| || |||||||| |||||||| || ||||||||||||||||||| ||| ||||||    
T  20406232 aactttatctagcaattgcttaatcgaagcttctgtttggtgaaaaatccgagcattcctttcaagtcaaatcacccacacacaagataaccatataaga 20406133  T
Q  109 t 109  Q
    |    
T  20406132 t 20406132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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