View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5907-Insertion-4 (Length: 770)

Name: NF5907-Insertion-4
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5907-Insertion-4
NF5907-Insertion-4
[»] chr5 (3 HSPs)
chr5 (9-770)||(6221455-6222216)
chr5 (253-416)||(6232481-6232644)
chr5 (507-588)||(6232729-6232810)


Alignment Details
Target: chr5 (Bit Score: 734; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 734; E-Value: 0
Query Start/End: Original strand, 9 - 770
Target Start/End: Original strand, 6221455 - 6222216
Alignment:
Q  9 tgttctagcttaaaaaacaaaaggaacaaaattttaatttgaccgaacaaaacaccaagcatcggattctgaccaatctaacggtctttcatttgtgact 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6221455 tgttctagcttaaaaaacaaaaggaacaaaattttaatttgaccgaacaaaacaccaagcatcggattctgaccaatctaacggtctttcatttgtgact 6221554  T
Q  109 agtcgttgaagcctctcgcccggtgaacaaaaaccttgctcaaatttcagttcacatacttcctttgcatcaggaggcaaagtcgtaacactagaagaag 208  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6221555 agtcgttgaagactctcgcccggtgaacaaaaaccttgctcaaatttcagttcacatacttcctttgcatcaggaggcaaagtcgtaacactagaagaag 6221654  T
Q  209 cccaatgaggaaaatcgaagtgagttctcggagatggtgatattgacaatggcaactcattcatcaactctttcaccaatgaaacagtttcatcacctga 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6221655 cccaatgaggaaaatcgaagtgagttctcggagatggtgatattgacaatggcaactcattgatcaactctttcaccaatgaaacagtttcatcacctga 6221754  T
Q  309 gataaactcatgtttcaaaagcatctctgccgtccatcttttcgaaggatccttgatgaaacacttttcgagaaaatcttttccgacttgtgataattca 408  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6221755 gataaactcatgtttcaaaagcatctctgccgtccatctttttgaaggatccttgatgaaacacttttcgagaaaatcttttccgacttgtgataattca 6221854  T
Q  409 tctggaatcaacggtgattcgtcttctgccccaattcgaattaacaacgaccacatatttgagccgctgcttacattccatgcatgtttacccgtagcca 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6221855 tctggaatcaacggtgattcgtcttctgccccaattcgaattaacaacgaccacatatttgaaccgctgcttacattccatgcatgtttacccgtagcca 6221954  T
Q  509 tctccacaatagcgcaaccaagagcccatatatctgccgttgattcataaacactctcgttcaccgcttctggtgacatatacagtggagttcccctaca 608  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6221955 tctccacaatagcgcaaccaagagcccatatatctgccggtgattcataaacactctcgttcaccgcttctggtgacatatacaatggagttcccctaca 6222054  T
Q  609 ttccaattttccaccatgttttagacctttctccttagcaaggccaaaatccgaaatcttaacttcgtcattctcaaatacaagaatgttttgtagcttc 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6222055 ttccaattttccaccatgttttagacctttctccttagcaaggccaaaatccgaaatcttaacttcgtcattctcaaatacaagaatgttttgtagcttc 6222154  T
Q  709 acatcgcagtgaacaaaaccattttcatgaacatgtttgagtccttgaacgacagatcttgt 770  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6222155 acatcgcagtgaacaaaaccattttcatgaacatgtttgagtccttgaacgactgatcttgt 6222216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 253 - 416
Target Start/End: Original strand, 6232481 - 6232644
Alignment:
Q  253 gacaatggcaactcattcatcaactctttcaccaatgaaacagtttcatcacctgagataaactcatgtttcaaaagcatctctgccgtccatcttttcg 352  Q
    ||||||||||||||||  |  ||||| || || | ||||||||||||| || | |||||||||  |||||| || ||||| ||||| ||||||||| ||     
T  6232481 gacaatggcaactcatcaactaactcatttacaactgaaacagtttcaacatcggagataaacggatgtttgaagagcatatctgctgtccatcttctca 6232580  T
Q  353 aaggatccttgatgaaacacttttcgagaaaatcttttccgacttgtgataattcatctggaat 416  Q
    |||||||||| |||||||||||||| | ||||||||||||  ||||||||||||| ||||||||    
T  6232581 aaggatccttaatgaaacacttttctaaaaaatcttttccttcttgtgataattcctctggaat 6232644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 507 - 588
Target Start/End: Original strand, 6232729 - 6232810
Alignment:
Q  507 catctccacaatagcgcaaccaagagcccatatatctgccgttgattcataaacactctcgttcaccgcttctggtgacata 588  Q
    ||||||||| |  ||||||||||||||||||||||| || |  |||||||| ||||| || ||||| |||||||||||||||    
T  6232729 catctccacgacggcgcaaccaagagcccatatatcggctgacgattcatacacactatcattcactgcttctggtgacata 6232810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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