View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5907-Insertion-5 (Length: 665)
Name: NF5907-Insertion-5
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907-Insertion-5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-135; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 298 - 546
Target Start/End: Original strand, 2756728 - 2756976
Alignment:
| Q |
298 |
tatcataattataacaataacaaagaaaacaaggaaaaaccttctttgattttttgtaaggcttcaaagagtggtttctgatttttcttcttaagaacct |
397 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2756728 |
tatcataattataacagtaacaaagaaaacaaggaaaaaccttctttgattttttgtaaggcttcaaagagtggtttctgatttttcttcttaagaacct |
2756827 |
T |
|
| Q |
398 |
tgccaagataatgaagagaacgttccaccgcgaatgaaacagcgacgatgacagtgcaaacaagagcaacaacccatgtaggtgtaaattgcaaatctct |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2756828 |
tgccaagataatgaagagaacgttccaccgcgaatgaaacagcgacgatgacagtgcaaacaagagcaacaacccatgtaggtgtaaattgcaaatctct |
2756927 |
T |
|
| Q |
498 |
tccttcttcagcttctcctccaccatgacccatgttgcagttgtgttac |
546 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2756928 |
tccttcttcagcttctcctccaccatgacccatgttgcagttgtgttac |
2756976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 202
Target Start/End: Original strand, 2756439 - 2756632
Alignment:
| Q |
9 |
gtcacctagaaggcgcctagcagtgccaaaaacatccttggaagagaaaaaagtctgaaaatgtgacttggatggtaattttgtttctttgacttcatcg |
108 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2756439 |
gtcacctagaaggcgcttagcagtgccaaaaacatccttggaagagaaaaaagtctgaaaatgtgacttggatggtaattttgtttctttgacttcatcg |
2756538 |
T |
|
| Q |
109 |
tccccattaatactacaaggaagcatatgaatagtccattctaccggaacacaaatttttatcatcccattttgtgttaccgttagaaacagtg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2756539 |
tccccattaatactacaaggaagcatatgaatagtccattctaccggaacacaaatttttatcatcccattttgtgttaccgttagaaacagtg |
2756632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 335 - 578
Target Start/End: Original strand, 2748700 - 2748944
Alignment:
| Q |
335 |
aaccttctttgattttttgtaaggcttcaaagagtggtttctgatttttcttcttaagaaccttgccaagataatgaagagaacgttccaccgcgaatga |
434 |
Q |
| |
|
|||||||||| ||||| |||| ||||| | | |||||||| || |||||||||||||||| ||||||||| |||||||||||| ||| | |||||||| |
|
|
| T |
2748700 |
aaccttctttaattttctgtagggcttgataaagtggtttttggtttttcttcttaagaaagttgccaagacaatgaagagaacattcagcggcgaatga |
2748799 |
T |
|
| Q |
435 |
aacagcgac-gatgacagtgcaaacaagagcaacaacccatgtaggtgtaaattgcaaatctcttccttcttcagcttctcctccaccatgacccatgtt |
533 |
Q |
| |
|
||| ||||| |||||| |||||||||| ||||||| ||||||||| | | |||||||||| |||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
2748800 |
aactgcgaccgatgacgctgcaaacaagggcaacaatccatgtaggagcatattgcaaatcgggtccttcttcaacttgtcctccaccatgacccatgtt |
2748899 |
T |
|
| Q |
534 |
gcagttgtgttacacaatgtttgatttgaacaacgttaacttact |
578 |
Q |
| |
|
| | ||||||| ||| |||||||||||||||| |||||||||| |
|
|
| T |
2748900 |
gtaactgtgttaaacagtgtttgatttgaacaatattaacttact |
2748944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 583 - 657
Target Start/End: Original strand, 2756974 - 2757048
Alignment:
| Q |
583 |
tactctttgttgtgttttatgttacaactgtgacatgggacataaaaaacaacaactactgcactatttcttgtt |
657 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2756974 |
tactctttgttgtgttttatgttacaactgcaacatgggacataaaaaacaacaactactgcactatttcttgtt |
2757048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 2748493 - 2748560
Alignment:
| Q |
120 |
actacaaggaagcatatgaatagtccattctaccggaacacaaatttttatcatcccattttgtgtta |
187 |
Q |
| |
|
||||||||||||||||||| |||||| || | ||||||||||||||| | |||||||||||||||| |
|
|
| T |
2748493 |
actacaaggaagcatatgataagtccactcatcaggaacacaaatttttgttatcccattttgtgtta |
2748560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 2748393 - 2748456
Alignment:
| Q |
11 |
cacctagaaggcgcctagcagtgccaaaaacatccttggaagagaaaaaagtctgaaaatgtga |
74 |
Q |
| |
|
|||| |||||||||| |||||||||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
2748393 |
caccaagaaggcgccgagcagtgccagaaacaagatccgaagagaaaaaagtctgaaaatgtga |
2748456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University