View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5907-Insertion-7 (Length: 605)

Name: NF5907-Insertion-7
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5907-Insertion-7
NF5907-Insertion-7
[»] chr3 (11 HSPs)
chr3 (226-605)||(19972656-19973034)
chr3 (149-233)||(19971942-19972026)
chr3 (149-210)||(8425242-8425303)
chr3 (484-534)||(7275770-7275820)
chr3 (497-564)||(18477998-18478065)
chr3 (165-224)||(22126445-22126504)
chr3 (163-213)||(38000479-38000529)
chr3 (149-214)||(43946345-43946413)
chr3 (163-197)||(54788994-54789028)
chr3 (165-213)||(2736704-2736752)
chr3 (165-213)||(40925750-40925798)
[»] chr6 (11 HSPs)
chr6 (284-568)||(32504232-32504516)
chr6 (481-605)||(92690-92813)
chr6 (226-324)||(8818540-8818638)
chr6 (226-324)||(8619943-8620041)
chr6 (226-295)||(32504536-32504605)
chr6 (149-210)||(97362-97423)
chr6 (163-233)||(26092671-26092741)
chr6 (149-223)||(25987969-25988046)
chr6 (152-233)||(6059790-6059874)
chr6 (163-213)||(10894996-10895046)
chr6 (149-233)||(17750034-17750121)
[»] scaffold0026 (1 HSPs)
scaffold0026 (322-538)||(91849-92066)
[»] chr2 (7 HSPs)
chr2 (461-563)||(29522188-29522290)
chr2 (481-568)||(43326520-43326607)
chr2 (149-233)||(5088768-5088852)
chr2 (486-549)||(36619793-36619856)
chr2 (149-187)||(43327750-43327788)
chr2 (163-228)||(5885369-5885434)
chr2 (524-568)||(21012236-21012280)
[»] chr7 (6 HSPs)
chr7 (461-563)||(17978308-17978410)
chr7 (149-233)||(37126718-37126802)
chr7 (481-605)||(37125918-37126041)
chr7 (165-213)||(31422073-31422121)
chr7 (162-233)||(18295168-18295239)
chr7 (166-207)||(8363849-8363890)
[»] chr4 (9 HSPs)
chr4 (481-605)||(55403723-55403846)
chr4 (149-233)||(55405116-55405200)
chr4 (513-568)||(257854-257909)
chr4 (509-562)||(11982965-11983018)
chr4 (163-233)||(7114342-7114412)
chr4 (163-233)||(16401146-16401216)
chr4 (165-213)||(37465935-37465983)
chr4 (163-228)||(43335350-43335415)
chr4 (165-213)||(14797280-14797328)
[»] chr1 (9 HSPs)
chr1 (492-568)||(12307524-12307600)
chr1 (173-233)||(12307125-12307185)
chr1 (163-233)||(181550-181620)
chr1 (499-568)||(51448357-51448426)
chr1 (163-233)||(47074430-47074500)
chr1 (163-213)||(8920037-8920087)
chr1 (322-356)||(12307397-12307431)
chr1 (502-548)||(19659353-19659399)
chr1 (149-213)||(27133135-27133202)
[»] chr8 (4 HSPs)
chr8 (478-568)||(21468575-21468665)
chr8 (507-549)||(13475996-13476038)
chr8 (165-213)||(33363795-33363843)
chr8 (165-213)||(42809733-42809781)
[»] scaffold0024 (1 HSPs)
scaffold0024 (163-233)||(11827-11897)
[»] chr5 (8 HSPs)
chr5 (515-568)||(3801144-3801197)
chr5 (149-233)||(37259245-37259332)
chr5 (163-233)||(35635007-35635077)
chr5 (163-233)||(19663064-19663134)
chr5 (163-197)||(38352108-38352142)
chr5 (484-520)||(3782230-3782266)
chr5 (173-233)||(19647088-19647148)
chr5 (165-213)||(22270285-22270333)
[»] scaffold0005 (1 HSPs)
scaffold0005 (165-213)||(42403-42451)


Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 226 - 605
Target Start/End: Original strand, 19972656 - 19973034
Alignment:
Q  226 atatttaagaaataatgatatagaacagaacaaactttttaacttcctccaactcagtttctaagggtttgtttgatttatatagaacagaacaaatgaa 325  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19972656 atattgaagaaataatgatatagaacagaacaaactttttaacttcctccaactcattttctaagggtttgtttgatttatatagaacagaacaaatgaa 19972755  T
Q  326 tattctaaagctagctatgatattcaatgatttaagttcctccatattctaaactctaaagctagctctaattccaaccatgaatagattagttcctcaa 425  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19972756 tattctaaagctagcattgatattcaatgatttaagttcctccatattctaaactctaaagctagctctaattccaaccatgaatagattagttcctcaa 19972855  T
Q  426 taatctaaagctagctctaattccaattatgcatttaagcagtattattaacaaaagtcaaaaatcaaaaatccccttttattttgattagggttatggg 525  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  19972856 taatctaaagctagctctaattccaattatgcatttaagcagtattattaacaaaagtcaaaaatcaaaaatccccttttattttgattagggttatgga 19972955  T
Q  526 aaaattgaaattgaaaaccaaattaaatatcaaattcattaacnnnnnnnnnngaaatcaaagaatcagagatacactta 605  Q
    |||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||    
T  19972956 aaaattgaaattgaaaaccaaattaaatatcaaattcattaac-aaacagaaagaaatcaaagaatcagagatacactta 19973034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 19971942 - 19972026
Alignment:
Q  149 tacaacatatttaagtaataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaaattgataattaaatatttaa 233  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19971942 tacaacatatttaagtaataaaccaaaaatcgatcattcaaaatttaaagtgcataatacataaaatcgataattaaatatttaa 19972026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 8425242 - 8425303
Alignment:
Q  149 tacaacatatttaagtaataaaccaaaaatccatcattcaaaatttaaagtgcataatacat 210  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8425242 tacaacatatttaagtaataaaccaaaaatcgatcattcaaaatttaaagtgcataatacat 8425303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 484 - 534
Target Start/End: Complemental strand, 7275820 - 7275770
Alignment:
Q  484 caaaaatcaaaaatccccttttattttgattagggttatgggaaaattgaa 534  Q
    ||||||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  7275820 caaaaataaaaaatccccttttgttttgatcagggttatgggaaaattgaa 7275770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 497 - 564
Target Start/End: Original strand, 18477998 - 18478065
Alignment:
Q  497 tccccttttattttgattagggttatgggaaaattgaaattgaaaaccaaattaaatatcaaattcat 564  Q
    ||||||||| ||||||||||||| || | ||||||||||||||| ||||||| ||| | |||||||||    
T  18477998 tccccttttgttttgattagggtaatagaaaaattgaaattgaataccaaatcaaaaaccaaattcat 18478065  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 22126445 - 22126504
Alignment:
Q  165 aataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaaattgataatta 224  Q
    ||||||||||||| | ||||||||||||||||| | ||||||| ||||| ||||| ||||    
T  22126445 aataaaccaaaaaccaatcattcaaaatttaaactacataatatataaagttgatcatta 22126504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 38000479 - 38000529
Alignment:
Q  163 gtaataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaa 213  Q
    |||||| |||||||||| ||||||||||||||||| | ||||||| |||||    
T  38000479 gtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaa 38000529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 214
Target Start/End: Complemental strand, 43946413 - 43946345
Alignment:
Q  149 tacaacatatttaagt---aataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaaa 214  Q
    ||||||| ||||||||   |||||| |||||||| ||||||||||||||||| | ||||||| ||||||    
T  43946413 tacaacacatttaagtcaaaataaatcaaaaatcgatcattcaaaatttaaactacataatatataaaa 43946345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 54789028 - 54788994
Alignment:
Q  163 gtaataaaccaaaaatccatcattcaaaatttaaa 197  Q
    ||||||||||||||||| |||||||||||||||||    
T  54789028 gtaataaaccaaaaatcgatcattcaaaatttaaa 54788994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 2736752 - 2736704
Alignment:
Q  165 aataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaa 213  Q
    ||||||||||||| | ||||||||||||||||| | ||||||| |||||    
T  2736752 aataaaccaaaaaccaatcattcaaaatttaaactacataatatataaa 2736704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 40925798 - 40925750
Alignment:
Q  165 aataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaa 213  Q
    ||||||||||||| | ||||||||||||||||| | ||||||| |||||    
T  40925798 aataaaccaaaaaccaatcattcaaaatttaaactacataatatataaa 40925750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 284 - 568
Target Start/End: Complemental strand, 32504516 - 32504232
Alignment:
Q  284 ttctaagggtttgtttgatttatatagaacagaacaaatgaatattctaaagctagctatgatattcaatgatttaagttcctccatattctaaactcta 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32504516 ttctaagggtttgtttgatttatatagaacagaacaaatgaatattctaaaggtagctatgatattcaatgatttaagttcctccatattctaaactcta 32504417  T
Q  384 aagctagctctaattccaaccatgaatagattagttcctcaataatctaaagctagctctaattccaattatgcatttaagcagtattattaacaaaagt 483  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32504416 aagctagctctaattccaaccatgaatagattagttcctcaataatctaaagctagctctaatttcaattatgcatttaagcagtattattaacaaaagt 32504317  T
Q  484 caaaaatcaaaaatccccttttattttgattagggttatgggaaaattgaaattgaaaaccaaattaaatatcaaattcattaac 568  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32504316 caaaaataaaaaatccccttttattttgattagggttatgggaaaattgaaattgaaaaccaaattaaatatcaaattcattaac 32504232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 481 - 605
Target Start/End: Complemental strand, 92813 - 92690
Alignment:
Q  481 agtcaaaaatcaaaaatccccttttattttgattagggttatgggaaaattgaaattgaaaaccaaattaaatatcaaattcattaacnnnnnnnnnnga 580  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||          ||    
T  92813 agtcaaaaatcaaaaatcccattttgttttgattagggttatgggaaaatttaaattgaaaaccaaatcaaatatcaaattcattaac-aaacaaaaaga 92715  T
Q  581 aatcaaagaatcagagatacactta 605  Q
    |||||||||||||||||||||||||    
T  92714 aatcaaagaatcagagatacactta 92690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 226 - 324
Target Start/End: Original strand, 8818540 - 8818638
Alignment:
Q  226 atatttaagaaataatgatatagaacagaacaaactttttaacttcctccaactcagtttctaagggtttgtttgatttatatagaacagaacaaatga 324  Q
    ||||| |||||||| ||||||||||||| | ||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  8818540 atattgaagaaatagtgatatagaacagtaaaaactctttaacttcctccaactcattttctaagggtgtgtttgatttatatagaacagaacaaatga 8818638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 226 - 324
Target Start/End: Complemental strand, 8620041 - 8619943
Alignment:
Q  226 atatttaagaaataatgatatagaacagaacaaactttttaacttcctccaactcagtttctaagggtttgtttgatttatatagaacagaacaaatga 324  Q
    ||||| |||||||| ||||||||||||| | ||||| |||||||||| |||||||| ||||||||||| ||||||||||||||| ||||||||||||||    
T  8620041 atattgaagaaatagtgatatagaacagtaaaaactctttaacttccaccaactcattttctaagggtgtgtttgatttatataaaacagaacaaatga 8619943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 32504605 - 32504536
Alignment:
Q  226 atatttaagaaataatgatatagaacagaacaaactttttaacttcctccaactcagtttctaagggttt 295  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32504605 atattgaagaaataatgatatagaacagaacaaactttttaacttcctccaactcattttctaagggttt 32504536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 97423 - 97362
Alignment:
Q  149 tacaacatatttaagtaataaaccaaaaatccatcattcaaaatttaaagtgcataatacat 210  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  97423 tacaacatatttaagtaataaaccaaaaatcgatcattcaaaatttaaagtgcataatacat 97362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 26092741 - 26092671
Alignment:
Q  163 gtaataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaaattgataattaaatatttaa 233  Q
    |||||||| |||||||| || |||||||||||||| | |||||||||||||||   |||||||||||||||    
T  26092741 gtaataaatcaaaaatcgataattcaaaatttaaactacataatacataaaatcagtaattaaatatttaa 26092671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 25988046 - 25987969
Alignment:
Q  149 tacaacatatttaagt---aataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaaattgataatt 223  Q
    ||||||||||||||||   ||||||  ||||||| || |||||||||||||| | || |||||||||||| |||||||    
T  25988046 tacaacatatttaagttgtaataaattaaaaatcgataattcaaaatttaaactacacaatacataaaatcgataatt 25987969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 152 - 233
Target Start/End: Original strand, 6059790 - 6059874
Alignment:
Q  152 aacatatttaagt---aataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaaattgataattaaatatttaa 233  Q
    |||||||||||||   ||||||||||||||| |||||| |||||||||| |  |||||| |||||||  ||| ||||||| ||||    
T  6059790 aacatatttaagttataataaaccaaaaatcgatcatttaaaatttaaactatataatatataaaatcaatagttaaatacttaa 6059874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 10894996 - 10895046
Alignment:
Q  163 gtaataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaa 213  Q
    ||||||||||||||| | ||||||||||||||||| | ||||||| |||||    
T  10894996 gtaataaaccaaaaaccgatcattcaaaatttaaactacataatatataaa 10895046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 17750121 - 17750034
Alignment:
Q  149 tacaacatatttaagt---aataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaaattgataattaaatatttaa 233  Q
    ||||||||||||||||   ||||||  ||||||  |||||||||||||| |||| ||||||| ||||| | ||| |||||||| ||||    
T  17750121 tacaacatatttaagttaaaataaattaaaaattgatcattcaaaatttgaagtacataatatataaattcgatcattaaatacttaa 17750034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 322 - 538
Target Start/End: Complemental strand, 92066 - 91849
Alignment:
Q  322 tgaatattctaaagctagctatgatattcaatgatttaagttcctccatattctaaactctaaagctagctct-aattccaaccatgaatagattagttc 420  Q
    |||||||| |||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  92066 tgaatattataaagctaactatgatattatatgatttaagttcctccatattctaaactctaaagctagctcttaattccaaccatgaatagattagttc 91967  T
Q  421 ctcaataatctaaagctagctctaattccaattatgcatttaagcagtattattaacaaaagtcaaaaatcaaaaatccccttttattttgattagggtt 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  91966 ctcaataatctaaagctagctctaattccaattatgcatttaagcagtattattaacaaaagtcaaaaatcaaaaatccccttttattttgattagggtt 91867  T
Q  521 atgggaaaattgaaattg 538  Q
    | ||||||||||||||||    
T  91866 aagggaaaattgaaattg 91849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 5e-39; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 461 - 563
Target Start/End: Original strand, 29522188 - 29522290
Alignment:
Q  461 taagcagtattattaacaaaagtcaaaaatcaaaaatccccttttattttgattagggttatgggaaaattgaaattgaaaaccaaattaaatatcaaat 560  Q
    ||||||||||||||||||||| | |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29522188 taagcagtattattaacaaaaataaaaaataaaaaatccccttttgttttgattagggttatgggaaaattgaaattgaaaaccaaattaaaaatcaaat 29522287  T
Q  561 tca 563  Q
    |||    
T  29522288 tca 29522290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 481 - 568
Target Start/End: Complemental strand, 43326607 - 43326520
Alignment:
Q  481 agtcaaaaatcaaaaatccccttttattttgattagggttatgggaaaattgaaattgaaaaccaaattaaatatcaaattcattaac 568  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  43326607 agtcaaaaatcaaaaatccccttttgttttgattagggttatgggaaaatttaaattgaaaaccaaatcaaatatcaaattcattaac 43326520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 5088852 - 5088768
Alignment:
Q  149 tacaacatatttaagtaataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaaattgataattaaatatttaa 233  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  5088852 tacaacatatttaagtaataaaccaaaaatcgatcattcaaaatttaaagtgcataatacatcaaatcgataattaaatatttaa 5088768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 486 - 549
Target Start/End: Original strand, 36619793 - 36619856
Alignment:
Q  486 aaaatcaaaaatccccttttattttgattagggttatgggaaaattgaaattgaaaaccaaatt 549  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||    
T  36619793 aaaatcaaaaatccccttttgttttgattagggttatgggaaaattgaagttgaaaatcaaatt 36619856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 43327788 - 43327750
Alignment:
Q  149 tacaacatatttaagtaataaaccaaaaatccatcattc 187  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  43327788 tacaacatatttaagtaataaaccaaaaatcgatcattc 43327750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 5885369 - 5885434
Alignment:
Q  163 gtaataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaaattgataattaaata 228  Q
    ||||||||||||||| | ||||||||||||||||| | ||||||| ||||| | ||| ||||||||    
T  5885369 gtaataaaccaaaaaccaatcattcaaaatttaaactacataatatataaagtcgatcattaaata 5885434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 568
Target Start/End: Original strand, 21012236 - 21012280
Alignment:
Q  524 ggaaaattgaaattgaaaaccaaattaaatatcaaattcattaac 568  Q
    |||||||| || ||||||||||||| ||| |||||||||||||||    
T  21012236 ggaaaattaaagttgaaaaccaaataaaaaatcaaattcattaac 21012280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 461 - 563
Target Start/End: Original strand, 17978308 - 17978410
Alignment:
Q  461 taagcagtattattaacaaaagtcaaaaatcaaaaatccccttttattttgattagggttatgggaaaattgaaattgaaaaccaaattaaatatcaaat 560  Q
    ||||||||||||||||||||| |||||||| |||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17978308 taagcagtattattaacaaaaatcaaaaataaaaaattcccttttgctttgattagggttatgggaaaattgaaattgaaaaccaaattaaaaatcaaat 17978407  T
Q  561 tca 563  Q
    |||    
T  17978408 tca 17978410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 37126802 - 37126718
Alignment:
Q  149 tacaacatatttaagtaataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaaattgataattaaatatttaa 233  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  37126802 tacaacatatttaagtaataaaccaaaaatcgatcattcaaaatttaaagtgcataatacatcaaatcgataattaaatatttaa 37126718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 481 - 605
Target Start/End: Complemental strand, 37126041 - 37125918
Alignment:
Q  481 agtcaaaaatcaaaaatccccttttattttgattagggttatgggaaaattgaaattgaaaaccaaattaaatatcaaattcattaacnnnnnnnnnnga 580  Q
    ||||||||||||||||||||||||| ||||  ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||          ||    
T  37126041 agtcaaaaatcaaaaatccccttttgttttagttagggttatgggaaaatttaaattgaaaaccaaatcaaatatcaaattcattaac-aaacaaaaaga 37125943  T
Q  581 aatcaaagaatcagagatacactta 605  Q
    |||||||||||||||||||||||||    
T  37125942 aatcaaagaatcagagatacactta 37125918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 31422121 - 31422073
Alignment:
Q  165 aataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaa 213  Q
    ||||||||||||||| ||||||||||||||||| | ||||||| |||||    
T  31422121 aataaaccaaaaatcaatcattcaaaatttaaactacataatatataaa 31422073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 18295239 - 18295168
Alignment:
Q  162 agtaataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaaattgataattaaatatttaa 233  Q
    |||||||||  ||||||| ||||||||||||||||| | ||||||| ||||| | ||| |||||||| ||||    
T  18295239 agtaataaataaaaaatcgatcattcaaaatttaaactacataatatataaagtcgatcattaaatacttaa 18295168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 8363890 - 8363849
Alignment:
Q  166 ataaaccaaaaatccatcattcaaaatttaaagtgcataata 207  Q
    |||||||||||||| ||||||||||||||||| | |||||||    
T  8363890 ataaaccaaaaatcgatcattcaaaatttaaactacataata 8363849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 481 - 605
Target Start/End: Complemental strand, 55403846 - 55403723
Alignment:
Q  481 agtcaaaaatcaaaaatccccttttattttgattagggttatgggaaaattgaaattgaaaaccaaattaaatatcaaattcattaacnnnnnnnnnnga 580  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||          ||    
T  55403846 agtcaaaaatcaaaaatcccctttggttttgattagggttatgggaaaatttaaattgaaaaccaaatcaaatatcaaattcattaac-aaacaaaaaga 55403748  T
Q  581 aatcaaagaatcagagatacactta 605  Q
    |||||||||||||||||||||||||    
T  55403747 aatcaaagaatcagagatacactta 55403723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 55405200 - 55405116
Alignment:
Q  149 tacaacatatttaagtaataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaaattgataattaaatatttaa 233  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  55405200 tacaacatatttaagtaataaaccaaaaattgatcattcaaaatttaaagtgcataatacatcaaatcgataattaaatatttaa 55405116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 513 - 568
Target Start/End: Original strand, 257854 - 257909
Alignment:
Q  513 ttagggttatgggaaaattgaaattgaaaaccaaattaaatatcaaattcattaac 568  Q
    |||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||    
T  257854 ttagggttatggaaaaattgaaattgaaaaccaaatcaaaaatcaaattcattaac 257909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 509 - 562
Target Start/End: Original strand, 11982965 - 11983018
Alignment:
Q  509 ttgattagggttatgggaaaattgaaattgaaaaccaaattaaatatcaaattc 562  Q
    |||||||||||||||||||||||||| ||||||| ||||| ||| |||||||||    
T  11982965 ttgattagggttatgggaaaattgaagttgaaaaacaaatcaaaaatcaaattc 11983018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 7114412 - 7114342
Alignment:
Q  163 gtaataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaaattgataattaaatatttaa 233  Q
    ||||||||| ||||||| ||||||||||||||||| | ||||||| | ||| ||||| |||||||| ||||    
T  7114412 gtaataaactaaaaatcgatcattcaaaatttaaattacataatataaaaagttgatcattaaataattaa 7114342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 16401216 - 16401146
Alignment:
Q  163 gtaataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaaattgataattaaatatttaa 233  Q
    |||||||||| |||||| | ||||||||||||||| | ||||||| ||||| | ||| |||||||||||||    
T  16401216 gtaataaaccgaaaatcgaacattcaaaatttaaactacataataaataaattcgatcattaaatatttaa 16401146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 37465935 - 37465983
Alignment:
Q  165 aataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaa 213  Q
    ||||||||||||||| ||||||||||||||||| | ||||||| |||||    
T  37465935 aataaaccaaaaatcaatcattcaaaatttaaactacataatatataaa 37465983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 43335350 - 43335415
Alignment:
Q  163 gtaataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaaattgataattaaata 228  Q
    |||||| |||||||| | ||||||||||||||||| | ||||||| ||||| | ||| ||||||||    
T  43335350 gtaatataccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattaaata 43335415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 14797280 - 14797328
Alignment:
Q  165 aataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaa 213  Q
    ||||||||||||| | ||||||||||||||||| | ||||||| |||||    
T  14797280 aataaaccaaaaaccaatcattcaaaatttaaactacataatatataaa 14797328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 492 - 568
Target Start/End: Original strand, 12307524 - 12307600
Alignment:
Q  492 aaaaatccccttttattttgattagggttatgggaaaattgaaattgaaaaccaaattaaatatcaaattcattaac 568  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  12307524 aaaaatccccttttgttttgattagggttatgggaaaatttaaattgaaaaccaaatcaaatatcaaattcattaac 12307600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 12307125 - 12307185
Alignment:
Q  173 aaaaatccatcattcaaaatttaaagtgcataatacataaaattgataattaaatatttaa 233  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12307125 aaaaatcgatcattcaaaatttaaagtgcataatacataaaatcgataattaaatatttaa 12307185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 181620 - 181550
Alignment:
Q  163 gtaataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaaattgataattaaatatttaa 233  Q
    ||||||||||||||||| ||||||||||||||||| | ||||||| ||||||||||| |||| ||| ||||    
T  181620 gtaataaaccaaaaatcgatcattcaaaatttaaactacataatatataaaattgatcattacatacttaa 181550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 499 - 568
Target Start/End: Complemental strand, 51448426 - 51448357
Alignment:
Q  499 cccttttattttgattagggttatgggaaaattgaaattgaaaaccaaattaaatatcaaattcattaac 568  Q
    ||||||| |||||||||||||||||| ||||||||| ||||||| ||||| ||| |  ||||||||||||    
T  51448426 cccttttgttttgattagggttatggaaaaattgaagttgaaaatcaaatcaaaaactaaattcattaac 51448357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 233
Target Start/End: Original strand, 47074430 - 47074500
Alignment:
Q  163 gtaataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaaattgataattaaatatttaa 233  Q
    ||||||||||||||||  ||||||||||||||||| | ||||||| ||||| | ||| |||||||| ||||    
T  47074430 gtaataaaccaaaaattgatcattcaaaatttaaactacataatatataaagtcgatcattaaatacttaa 47074500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 213
Target Start/End: Complemental strand, 8920087 - 8920037
Alignment:
Q  163 gtaataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaa 213  Q
    |||||||||| ||| || ||||||||||||||||| | |||||||||||||    
T  8920087 gtaataaaccgaaagtcgatcattcaaaatttaaattacataatacataaa 8920037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 356
Target Start/End: Original strand, 12307397 - 12307431
Alignment:
Q  322 tgaatattctaaagctagctatgatattcaatgat 356  Q
    |||||||||||||||||||||| ||||||||||||    
T  12307397 tgaatattctaaagctagctataatattcaatgat 12307431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 502 - 548
Target Start/End: Original strand, 19659353 - 19659399
Alignment:
Q  502 ttttattttgattagggttatgggaaaattgaaattgaaaaccaaat 548  Q
    |||| |||||||||||||||| | ||||||||||||||||| |||||    
T  19659353 ttttgttttgattagggttatagaaaaattgaaattgaaaaacaaat 19659399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 27133202 - 27133135
Alignment:
Q  149 tacaacatatttaagt---aataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaa 213  Q
    ||||||||||||||||   |||||| |||||| | ||||||||||||||||| | ||||||| |||||    
T  27133202 tacaacatatttaagtcgtaataaatcaaaaaccgatcattcaaaatttaaactacataatatataaa 27133135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 478 - 568
Target Start/End: Complemental strand, 21468665 - 21468575
Alignment:
Q  478 aaaagtcaaaaatcaaaaatccccttttattttgattagggttatgggaaaattgaaattgaaaaccaaattaaatatcaaattcattaac 568  Q
    ||||||||||||||||||||||| |||| ||||||| ||||| |||||||||||||||||||||||||||| ||| |||||||| ||||||    
T  21468665 aaaagtcaaaaatcaaaaatcccattttgttttgatcagggtcatgggaaaattgaaattgaaaaccaaatcaaaaatcaaatttattaac 21468575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 549
Target Start/End: Original strand, 13475996 - 13476038
Alignment:
Q  507 ttttgattagggttatgggaaaattgaaattgaaaaccaaatt 549  Q
    |||||||||||||||||| ||||||||| ||||||||||||||    
T  13475996 ttttgattagggttatggaaaaattgaagttgaaaaccaaatt 13476038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 33363843 - 33363795
Alignment:
Q  165 aataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaa 213  Q
    ||||||||||||||| ||||||||||||||||| | ||||||| |||||    
T  33363843 aataaaccaaaaatcaatcattcaaaatttaaactacataatatataaa 33363795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 42809781 - 42809733
Alignment:
Q  165 aataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaa 213  Q
    ||||||||||||| | ||||||||||||||||| | ||||||| |||||    
T  42809781 aataaaccaaaaaccaatcattcaaaatttaaactacataatatataaa 42809733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 163 - 233
Target Start/End: Original strand, 11827 - 11897
Alignment:
Q  163 gtaataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaaattgataattaaatatttaa 233  Q
    ||||||||||||||| | ||||||||||||||||| | ||||||| ||||||| |||||||| ||| ||||    
T  11827 gtaataaaccaaaaaacgatcattcaaaatttaaactacataatatataaaatcgataattagatacttaa 11897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 515 - 568
Target Start/End: Original strand, 3801144 - 3801197
Alignment:
Q  515 agggttatgggaaaattgaaattgaaaaccaaattaaatatcaaattcattaac 568  Q
    |||||||||||||||||||||||||||| ||||| ||| |||||||||| ||||    
T  3801144 agggttatgggaaaattgaaattgaaaatcaaatcaaaaatcaaattcaataac 3801197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 37259332 - 37259245
Alignment:
Q  149 tacaacatatttaagt---aataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaaattgataattaaatatttaa 233  Q
    ||||||||||||||||   |||||||||||| || |||||||||||| |||| | | ||||||||||| | ||| |||||||||||||    
T  37259332 tacaacatatttaagttgtaataaaccaaaagtcgatcattcaaaatgtaaactacgtaatacataaagtcgatcattaaatatttaa 37259245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 233
Target Start/End: Original strand, 35635007 - 35635077
Alignment:
Q  163 gtaataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaaattgataattaaatatttaa 233  Q
    ||||||||||||||| | ||||||||||||||||| | ||||||| ||||| | ||| |||||||| ||||    
T  35635007 gtaataaaccaaaaaacgatcattcaaaatttaaactacataatatataaagtcgatcattaaatacttaa 35635077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 233
Target Start/End: Original strand, 19663064 - 19663134
Alignment:
Q  163 gtaataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaaattgataattaaatatttaa 233  Q
    |||||||| |||||||| || |||||||||||||| | ||||||| ||||| | ||| |||||||| ||||    
T  19663064 gtaataaatcaaaaatcgattattcaaaatttaaactacataatatataaagtcgatcattaaatacttaa 19663134  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 38352142 - 38352108
Alignment:
Q  163 gtaataaaccaaaaatccatcattcaaaatttaaa 197  Q
    ||||||||||||||||| |||||||||||||||||    
T  38352142 gtaataaaccaaaaatcgatcattcaaaatttaaa 38352108  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 520
Target Start/End: Original strand, 3782230 - 3782266
Alignment:
Q  484 caaaaatcaaaaatccccttttattttgattagggtt 520  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  3782230 caaaaataaaaaatccccttttgttttgattagggtt 3782266  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 19647148 - 19647088
Alignment:
Q  173 aaaaatccatcattcaaaatttaaagtgcataatacataaaattgataattaaatatttaa 233  Q
    |||||||  |||||||||||||||| | ||||||  ||||||| |||||||||||| ||||    
T  19647148 aaaaatcgttcattcaaaatttaaactacataatgtataaaatcgataattaaatacttaa 19647088  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 22270285 - 22270333
Alignment:
Q  165 aataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaa 213  Q
    ||||||||||||| | ||||||||||||||||| | ||||||| |||||    
T  22270285 aataaaccaaaaaccaatcattcaaaatttaaactacataatatataaa 22270333  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 42451 - 42403
Alignment:
Q  165 aataaaccaaaaatccatcattcaaaatttaaagtgcataatacataaa 213  Q
    ||||||||||||| | ||||||||||||||||| | ||||||| |||||    
T  42451 aataaaccaaaaaccaatcattcaaaatttaaactacataatatataaa 42403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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