View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5907-Insertion-8 (Length: 540)

Name: NF5907-Insertion-8
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5907-Insertion-8
NF5907-Insertion-8
[»] chr1 (11 HSPs)
chr1 (37-399)||(1970232-1970598)
chr1 (37-414)||(2013390-2013768)
chr1 (314-415)||(23232746-23232846)
chr1 (311-414)||(44371528-44371631)
chr1 (317-414)||(43945374-43945471)
chr1 (314-407)||(48003201-48003294)
chr1 (317-418)||(12980417-12980518)
chr1 (314-425)||(46729475-46729584)
chr1 (159-296)||(33078090-33078227)
chr1 (318-414)||(34752722-34752818)
chr1 (363-414)||(15650050-15650101)
[»] chr2 (4 HSPs)
chr2 (317-412)||(35748161-35748256)
chr2 (297-414)||(11903566-11903683)
chr2 (297-414)||(30522637-30522754)
chr2 (354-432)||(17539541-17539619)
[»] chr3 (11 HSPs)
chr3 (297-412)||(33848598-33848713)
chr3 (314-417)||(41299948-41300050)
chr3 (314-416)||(26510521-26510623)
chr3 (314-414)||(41424529-41424629)
chr3 (316-402)||(36823225-36823311)
chr3 (334-423)||(21593530-21593619)
chr3 (325-412)||(31901679-31901766)
chr3 (325-430)||(31681271-31681376)
chr3 (325-430)||(31917318-31917423)
chr3 (155-200)||(31280343-31280388)
chr3 (70-106)||(32007965-32008001)
[»] chr8 (2 HSPs)
chr8 (296-414)||(13555628-13555746)
chr8 (296-414)||(13670819-13670937)
[»] chr7 (2 HSPs)
chr7 (297-414)||(22679353-22679470)
chr7 (316-418)||(33096982-33097084)
[»] chr4 (2 HSPs)
chr4 (314-414)||(28874530-28874630)
chr4 (155-200)||(16715412-16715457)
[»] chr6 (2 HSPs)
chr6 (295-414)||(2722546-2722665)
chr6 (314-414)||(34176166-34176265)
[»] chr5 (3 HSPs)
chr5 (169-264)||(26343555-26343650)
chr5 (317-432)||(41471653-41471768)
chr5 (161-197)||(26316084-26316120)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 37 - 399
Target Start/End: Complemental strand, 1970598 - 1970232
Alignment:
Q  37 tctatgcagtataactcttgctagaatttctatagttgccatctagttattgtgttgacacccaataattgtatgnnnnnnnnnnnnnnnnnnnngtaat 136  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||                     ||||    
T  1970598 tctatgcagtataactcttgctagaatttctatagttgccatttagttattgtgtagacacccaataattgtatgttttatttatttttctttttttaat 1970499  T
Q  137 ttcacgtaacctagcaactatggatttgtactttaagatgttggtaacgaaatgaaataaggcacaaaagagtgtaataattagtttattttcttctatc 236  Q
    |||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||    
T  1970498 ttcacg-aaccttgcaactatggatttgtactctaagatgttggtaacgaaatgaaacaaggcaccaaatagtgtaataattagtttattttcttctatc 1970400  T
Q  237 ttaattttggatatatcatcatggcctcttgtatattttcttaacaaccat-----accacctattaggggtgtttcctgaatggattggttcggtttta 331  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||     |||||||||||||||||||  |||||||||||||||||||||||    
T  1970399 ttaattttggatatatcgtcatggcctcttgtatattttcttaccaaccataccataccacctattaggggtgttcgctgaatggattggttcggtttta 1970300  T
Q  332 ggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaa 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1970299 ggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattggtttggttttaa 1970232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 37 - 414
Target Start/End: Complemental strand, 2013768 - 2013390
Alignment:
Q  37 tctatgcagtataactcttgctagaatttctatagttgccatctagttattgtgttgacacccaataattgtatgnnnnnnnnnnnnnnnnnnnngtaat 136  Q
    |||||||||||| | ||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||                    |||||    
T  2013768 tctatgcagtattaatcttgctagaatttctatagttgtcatttagtcattgtgttgacacccaataattgtatgttttatttatttttctttttgtaat 2013669  T
Q  137 ttcacgtaacctagcaactatggatttgtactttaagatgttggtaacgaaatgaaataaggcacaaaagagtgtaataattagtttattttcttctatc 236  Q
    |||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2013668 ttcacg-aaccttgcaactatggatttgtactctaagatgttggtaacgaaatgaaataaggcactaaagagtgtaataattagtttattttcttctatc 2013570  T
Q  237 ttaattttggatatatcatcatggcctcttgtatattt--tcttaacaaccataccacctattaggggtgtttcctgaatggattggttcggttttagga 334  Q
    ||||||| ||||||||| ||||||| |||||||||| |  | ||  ||||||||| | ||||||||||||||  |   || ||||||||||||||||| |    
T  2013569 ttaatttgggatatatcgtcatggcttcttgtatatatattttttccaaccatactatctattaggggtgttcgcgacattgattggttcggttttagaa 2013470  T
Q  335 ggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatcc 414  Q
    | ||||||||| ||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2013469 gaaaaaaccatctgatccaatctcttcaattttcttatttgttcatccaattgatttggttttaaaatcaaatccaatcc 2013390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 314 - 415
Target Start/End: Complemental strand, 23232846 - 23232746
Alignment:
Q  314 tggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatc 413  Q
    ||||||||||||||||| ||||||||||||||  |||| ||| ||| | ||||| |||||||||| |||||||| |||||||||||||||||||||||||    
T  23232846 tggattggttcggttttgggaggaaaaaccatccgatccaatattt-cggttttgttatttgttcgtccaattggtttggttttaaaatcaaatccaatc 23232748  T
Q  414 cg 415  Q
    ||    
T  23232747 cg 23232746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 311 - 414
Target Start/End: Complemental strand, 44371631 - 44371528
Alignment:
Q  311 gaatggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatcca 410  Q
    |||||||||| |||| |||| | |||||||| ||| ||||| ||||||||| | ||| ||||||||||||||||||  ||||||||||||||||||||||    
T  44371631 gaatggattgtttcgattttggaaggaaaaatcatttgatccaatcttttcgggtttgttatttgttcatccaattagtttggttttaaaatcaaatcca 44371532  T
Q  411 atcc 414  Q
    ||||    
T  44371531 atcc 44371528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 317 - 414
Target Start/End: Original strand, 43945374 - 43945471
Alignment:
Q  317 attggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatcc 414  Q
    ||||||| ||||||||||||||||| ||| ||||| ||||| ||  |||||||||||||||||||||||   ||||||||||||||||||||| ||||    
T  43945374 attggtttggttttaggaggaaaaatcatctgatccaatctatttggttttcttatttgttcatccaatcagtttggttttaaaatcaaatccgatcc 43945471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 314 - 407
Target Start/End: Complemental strand, 48003294 - 48003201
Alignment:
Q  314 tggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaat 407  Q
    |||||||||||| ||||  |||||||||| || ||||| |||||||||  |||| |||||||||||| |||||| |||| ||||||||||||||    
T  48003294 tggattggttcgattttgagaggaaaaactatttgatccaatcttttctcttttgttatttgttcattcaattggtttgattttaaaatcaaat 48003201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 418
Target Start/End: Original strand, 12980417 - 12980518
Alignment:
Q  317 attggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatccga 416  Q
    ||||||| |||||| ||||||||||||||  |||| ||||| |||  |||| ||||||||| ||||||||  |||| |||||||||||||| ||||| ||    
T  12980417 attggtttggttttgggaggaaaaaccatccgatccaatctcttcgattttattatttgtttatccaatttgtttgattttaaaatcaaattcaatctga 12980516  T
Q  417 tc 418  Q
    ||    
T  12980517 tc 12980518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 314 - 425
Target Start/End: Complemental strand, 46729584 - 46729475
Alignment:
Q  314 tggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatc 413  Q
    |||||||||||| |||||||||||||||||||  |||| ||||| ||| ||||| ||||||||||||  ||||  ||||   |||||||||||| |||||    
T  46729584 tggattggttcgattttaggaggaaaaaccattcgatccaatctcttcggttttgttatttgttcatttaattagtttg--attaaaatcaaattcaatc 46729487  T
Q  414 cgatctgatcca 425  Q
    | || |||||||    
T  46729486 caatatgatcca 46729475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 296
Target Start/End: Complemental strand, 33078227 - 33078090
Alignment:
Q  159 gatttgtactttaagatgttggtaacga---aatgaaataaggcacaaaagagtgtaataattagtttattttcttctatcttaattttggatatatcat 255  Q
    |||||||||| |||||||||  ||||||   |||||||||| |||| || |||||  |||||| | |||||||  ||||| |||||||| |||||| | |    
T  33078227 gatttgtactctaagatgttactaacgacgaaatgaaataatgcactaa-gagtg--ataatttgattattttactctatattaatttttgatataacgt 33078131  T
Q  256 catggcctcttgtatattttcttaacaaccataccacctat 296  Q
    |||| ||||||||||| ||||||  ||||||||||| ||||    
T  33078130 catgacctcttgtataatttctttccaaccataccatctat 33078090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 414
Target Start/End: Complemental strand, 34752818 - 34752722
Alignment:
Q  318 ttggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatcc 414  Q
    |||||||||||||   |||||||| |||  |||| ||| | ||||||||| ||||||||||||| ||||| ||||  |||||||| |||| ||||||    
T  34752818 ttggttcggttttgaaaggaaaaatcatccgatcaaatttcttcagttttgttatttgttcatcaaattggtttgactttaaaattaaattcaatcc 34752722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 414
Target Start/End: Original strand, 15650050 - 15650101
Alignment:
Q  363 gttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatcc 414  Q
    ||||| |||||| |||||||||||| ||||||||||||||| |||| |||||    
T  15650050 gttttgttatttattcatccaattggtttggttttaaaatctaatctaatcc 15650101  T

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Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 317 - 412
Target Start/End: Complemental strand, 35748256 - 35748161
Alignment:
Q  317 attggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaat 412  Q
    ||||||||||||||||||||||||||||| ||||| |||  |||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  35748256 attggttcggttttaggaggaaaaaccatttgatccaattatttcggttttgttatttgttcatccaattggtttggttttaaaatcaaatccaat 35748161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 297 - 414
Target Start/End: Original strand, 11903566 - 11903683
Alignment:
Q  297 taggggtgtttcctgaatggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttt 396  Q
    ||||||||||  | || ||||||||||||||||| | ||||||||||||  |||| ||| | ||| ||||| ||||||||||||||||||| ||||||||    
T  11903566 taggggtgttcgcggattggattggttcggttttggaaggaaaaaccatccgatccaatgtcttcggttttgttatttgttcatccaattggtttggttt 11903665  T
Q  397 taaaatcaaatccaatcc 414  Q
    ||||||||||||||||||    
T  11903666 taaaatcaaatccaatcc 11903683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 297 - 414
Target Start/End: Complemental strand, 30522754 - 30522637
Alignment:
Q  297 taggggtgtttcctgaatggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttt 396  Q
    ||||||||||  | || ||||||||||||||||| | ||||||||||||  |||| ||| | ||| ||||| ||||||||||||||||||| ||||||||    
T  30522754 taggggtgttcgcggattggattggttcggttttggaaggaaaaaccatccgatccaatgtcttcggttttgttatttgttcatccaattggtttggttt 30522655  T
Q  397 taaaatcaaatccaatcc 414  Q
    ||||||||||||||||||    
T  30522654 taaaatcaaatccaatcc 30522637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 354 - 432
Target Start/End: Original strand, 17539541 - 17539619
Alignment:
Q  354 atcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatccgatctgatccataaaaat 432  Q
    ||||||||  |||| ||||||||||||||||||| ||||||||||||||||||| |||| | |||| ||||| ||||||    
T  17539541 atcttttcgattttgttatttgttcatccaattggtttggttttaaaatcaaattcaattcaatctaatccaaaaaaat 17539619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 297 - 412
Target Start/End: Original strand, 33848598 - 33848713
Alignment:
Q  297 taggggtgtttcctgaatggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttt 396  Q
    ||||||||||  | || ||||||||||| |||||| ||||||||| |||  |||| ||||| ||||||||| ||||||||||||||||||| ||||||||    
T  33848598 taggggtgttcgcggattggattggttcagttttacgaggaaaaatcatccgatccaatctcttcagttttgttatttgttcatccaattggtttggttt 33848697  T
Q  397 taaaatcaaatccaat 412  Q
    ||||||||||||||||    
T  33848698 taaaatcaaatccaat 33848713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 314 - 417
Target Start/End: Original strand, 41299948 - 41300050
Alignment:
Q  314 tggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatc 413  Q
    |||||||||||||||||||||||||||| ||| ||||| ||||  || |||||||||| ||||||||||||||| |||| |||| |||||||||||||||    
T  41299948 tggattggttcggttttaggaggaaaaatcatctgatccaatcactttagttttctta-ttgttcatccaattggtttgattttgaaatcaaatccaatc 41300046  T
Q  414 cgat 417  Q
    ||||    
T  41300047 cgat 41300050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 314 - 416
Target Start/End: Original strand, 26510521 - 26510623
Alignment:
Q  314 tggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatc 413  Q
    ||||||||||||||||| |||| ||||| ||| ||||| ||| ||||| ||| | || |||||||||||||||| |||||||||||||||||||||||||    
T  26510521 tggattggttcggttttgggagtaaaaatcatctgatccaattttttcggttctgttgtttgttcatccaattggtttggttttaaaatcaaatccaatc 26510620  T
Q  414 cga 416  Q
    |||    
T  26510621 cga 26510623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 314 - 414
Target Start/End: Complemental strand, 41424629 - 41424529
Alignment:
Q  314 tggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatc 413  Q
    ||||||||||||||||| |||||||||||||   |||| |||   ||||||||| ||||||| ||||||||||  |||||||||||||||||||||||||    
T  41424629 tggattggttcggttttgggaggaaaaaccaaccgatccaattacttcagttttgttatttgctcatccaatttgtttggttttaaaatcaaatccaatc 41424530  T
Q  414 c 414  Q
    |    
T  41424529 c 41424529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 316 - 402
Target Start/End: Original strand, 36823225 - 36823311
Alignment:
Q  316 gattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaat 402  Q
    ||||||||||||||| |||||||||| ||| ||||| ||||| ||| ||||| ||||||||||||| ||||||||| ||||||||||    
T  36823225 gattggttcggttttgggaggaaaaatcatttgatccaatctcttcggttttgttatttgttcatctaattgattttgttttaaaat 36823311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 334 - 423
Target Start/End: Original strand, 21593530 - 21593619
Alignment:
Q  334 aggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatccgatctgatc 423  Q
    |||||||| ||| ||||| ||||||||||||||| |||||| |||||| ||||  ||||||||||||||||||| |||||| ||||||||    
T  21593530 aggaaaaatcatctgatccaatcttttcagttttgttatttattcatctaattagtttggttttaaaatcaaattcaatccaatctgatc 21593619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 325 - 412
Target Start/End: Complemental strand, 31901766 - 31901679
Alignment:
Q  325 ggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaat 412  Q
    |||||| ||||||||||||||  |||| |||   ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  31901766 ggttttgggaggaaaaaccatccgatccaattacttcggttttgttatttgtttatccaattgatttggttttaaaatcaaatccaat 31901679  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 325 - 430
Target Start/End: Original strand, 31681271 - 31681376
Alignment:
Q  325 ggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatccgatctgatcc 424  Q
    |||||| ||||||||||||||  |||| |||   ||  ||||| ||||||||||||||||||| |||||||||||||||||||| ||| | |||||||||    
T  31681271 ggttttgggaggaaaaaccatccgatccaattacttgggttttgttatttgttcatccaattggtttggttttaaaatcaaatctaattcaatctgatcc 31681370  T
Q  425 ataaaa 430  Q
    | ||||    
T  31681371 acaaaa 31681376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 325 - 430
Target Start/End: Complemental strand, 31917423 - 31917318
Alignment:
Q  325 ggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatccgatctgatcc 424  Q
    |||||| |||| ||||||||| ||||| |||   ||| ||||| ||||||||||||||||||| |||||||||||||||||||| ||| | ||| |||||    
T  31917423 ggttttgggagaaaaaaccatctgatccaattacttcggttttgttatttgttcatccaattggtttggttttaaaatcaaatctaattcaatccgatcc 31917324  T
Q  425 ataaaa 430  Q
    | ||||    
T  31917323 acaaaa 31917318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 31280343 - 31280388
Alignment:
Q  155 tatggatttgtactttaagatgttggtaacgaaatgaaataaggca 200  Q
    |||||||||||||||||| ||| ||||||  |||||||||||||||    
T  31280343 tatggatttgtactttaatatgatggtaataaaatgaaataaggca 31280388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 32008001 - 32007965
Alignment:
Q  70 agttgccatctagttattgtgttgacacccaataatt 106  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  32008001 agttgtcatttagttattgtgttgacacccaataatt 32007965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 296 - 414
Target Start/End: Complemental strand, 13555746 - 13555628
Alignment:
Q  296 ttaggggtgtttcctgaatggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggtt 395  Q
    |||||||||||  | || ||||||||||||||||| | ||||||||| ||  |||| ||| | ||| ||||| |||||||||||||||||||||||||||    
T  13555746 ttaggggtgttcgcggattggattggttcggttttggaaggaaaaactatccgatccaatgtcttcggttttgttatttgttcatccaattgatttggtt 13555647  T
Q  396 ttaaaatcaaatccaatcc 414  Q
    |||||||||||||||||||    
T  13555646 ttaaaatcaaatccaatcc 13555628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 296 - 414
Target Start/End: Original strand, 13670819 - 13670937
Alignment:
Q  296 ttaggggtgtttcctgaatggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggtt 395  Q
    |||||||||||  | || ||||||||||||||||| | ||||||||| ||  |||| ||| | ||| ||||| |||||||||||||||||||||||||||    
T  13670819 ttaggggtgttcgcggattggattggttcggttttggaaggaaaaactatccgatccaatgtcttcggttttgttatttgttcatccaattgatttggtt 13670918  T
Q  396 ttaaaatcaaatccaatcc 414  Q
    |||||||||||||||||||    
T  13670919 ttaaaatcaaatccaatcc 13670937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 297 - 414
Target Start/End: Complemental strand, 22679470 - 22679353
Alignment:
Q  297 taggggtgtttcctgaatggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttt 396  Q
    ||||||||||  | || ||||||||||||||||| | |||||||||||| | ||| ||| | ||| ||||| ||||||||||||||||||| ||||||||    
T  22679470 taggggtgttcgcggattggattggttcggttttggaaggaaaaaccatctaatccaatgtcttcggttttgttatttgttcatccaattggtttggttt 22679371  T
Q  397 taaaatcaaatccaatcc 414  Q
    ||||||||||||||||||    
T  22679370 taaaatcaaatccaatcc 22679353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 418
Target Start/End: Original strand, 33096982 - 33097084
Alignment:
Q  316 gattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatccg 415  Q
    ||||||||||||||| ||||||||||  || ||||| |||   ||  ||||| ||| ||||||||||||||| ||||||||||||||||||  |||||||    
T  33096982 gattggttcggttttgggaggaaaaataatctgatccaattactttggttttgttacttgttcatccaattggtttggttttaaaatcaaactcaatccg 33097081  T
Q  416 atc 418  Q
    |||    
T  33097082 atc 33097084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 314 - 414
Target Start/End: Complemental strand, 28874630 - 28874530
Alignment:
Q  314 tggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatc 413  Q
    ||||||||||| ||||||  |||||||| ||||||||| ||||| |||  |||| |||||||||||||||| || ||||||||||||||||||| |||||    
T  28874630 tggattggttcagttttaaaaggaaaaatcatatgatccaatctcttcgattttgttatttgttcatccaaatggtttggttttaaaatcaaattcaatc 28874531  T
Q  414 c 414  Q
    |    
T  28874530 c 28874530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 16715457 - 16715412
Alignment:
Q  155 tatggatttgtactttaagatgttggtaacgaaatgaaataaggca 200  Q
    |||||||||||| | ||||||| |||||| ||||||||||||||||    
T  16715457 tatggatttgtattataagatgatggtaatgaaatgaaataaggca 16715412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 295 - 414
Target Start/End: Complemental strand, 2722665 - 2722546
Alignment:
Q  295 attaggggtgtttcctgaatggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggt 394  Q
    ||||||||||||| | || ||||||||||||||||| |||| ||||| ||| ||||| |||   ||  |||||  ||||| ||||| |||||| ||||||    
T  2722665 attaggggtgtttgcggattggattggttcggttttgggagaaaaaatcatctgatccaattgctttggttttgctatttattcattcaattggtttggt 2722566  T
Q  395 tttaaaatcaaatccaatcc 414  Q
    ||||||||||||||||||||    
T  2722565 tttaaaatcaaatccaatcc 2722546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 314 - 414
Target Start/End: Complemental strand, 34176265 - 34176166
Alignment:
Q  314 tggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatc 413  Q
    |||||||||||| |||| ||||||||||||||  |||| ||||||||| |||||  ||||| |||||||||||| |||  | ||| ||||||||||||||    
T  34176265 tggattggttcgatttttggaggaaaaaccatccgatc-aatcttttcggttttgctatttattcatccaattggtttaatcttagaatcaaatccaatc 34176167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 169 - 264
Target Start/End: Original strand, 26343555 - 26343650
Alignment:
Q  169 ttaagatgttggtaacgaaatgaaataaggcacaaaagagtgtaataattagtttattttcttctatcttaattttggatatatcatcatggcctc 264  Q
    |||||||||||| || ||||| ||||||| ||| ||||| | | |||||||| || || |||||| |||||| ||||||||||||| |||||||||    
T  26343555 ttaagatgttggaaatgaaataaaataagacactaaagaatattataattagattgttctcttctgtcttaaatttggatatatcaccatggcctc 26343650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 317 - 432
Target Start/End: Complemental strand, 41471768 - 41471653
Alignment:
Q  317 attggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatccga 416  Q
    |||||||| ||| | |||||||||| ||| ||| ||||||| |||  |||| |||||||||||| |||||| |||||||||| ||| ||||  ||||| |    
T  41471768 attggttcagttatgggaggaaaaatcatttgagctaatctcttcgattttgttatttgttcattcaattggtttggttttagaataaaatttaatccaa 41471669  T
Q  417 tctgatccataaaaat 432  Q
    || ||| || ||||||    
T  41471668 tccgattcaaaaaaat 41471653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 26316084 - 26316120
Alignment:
Q  161 tttgtactttaagatgttggtaacgaaatgaaataag 197  Q
    |||||||| |||||||||||||| |||||||||||||    
T  26316084 tttgtactctaagatgttggtaatgaaatgaaataag 26316120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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