View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907-Insertion-9 (Length: 530)
Name: NF5907-Insertion-9
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907-Insertion-9 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 9 - 434
Target Start/End: Complemental strand, 7664365 - 7663940
Alignment:
| Q |
9 |
agttgtacttgtttgttcttgccgcttatgagaggtatctttgttcttgccaacaatgaaatctatctcgagtttagagttcagtttaattttaaaaaat |
108 |
Q |
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| T |
7664365 |
agttgtacttgtttgttcttgccgtttatgagaggtatctttgttcttgccgacaatgaaatctatctcgagtttagagttcaatttaattttaaaaaat |
7664266 |
T |
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| Q |
109 |
tgtcccaataaacggatagataaaagcacctccaatgatggttttaagaagttttaaattaaaaaagtgtattcttaacgagttttacggttagagtaga |
208 |
Q |
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| T |
7664265 |
tgtcccaataaacggatagataaaagcacctccaatgacggttttaagaagttttaaattaaaaaagtgtattcttaacgagttttactgttagagtaga |
7664166 |
T |
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| Q |
209 |
ttgacggaacaaagttttataaggatgattgcttattgaagtaactcatctttaacaatacattcgatccatcataaactcttaagttttgagagtttga |
308 |
Q |
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| T |
7664165 |
ttgacggaacaaagttttataaggatgattgcttattgaagtaactcatctttaacaatacattcgatccatcataaactcttaagttttgagagtttga |
7664066 |
T |
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| Q |
309 |
aggaaagggagggaagacttttgaatgaaaaaagaacaagtgnnnnnnntagaagattttgagaagagaaaattttgagggattcattttcttatttgta |
408 |
Q |
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| T |
7664065 |
aggaaagggagggaagacttttgaatgaaaaaagagcaagtggaaaaaatagaagattttgagaagagaaaactttgagggatttattttcttgtttgta |
7663966 |
T |
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| Q |
409 |
gtacaaaatccttctgatctatgttg |
434 |
Q |
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| T |
7663965 |
gtacaaaatcctcctgatctatgttg |
7663940 |
T |
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