View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_high_14 (Length: 454)
Name: NF5907_high_14
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 8 - 436
Target Start/End: Original strand, 5800364 - 5800793
Alignment:
| Q |
8 |
tgagatgaaccattcaagaatattcttccaggaactctatgcaaccccatttccacaccggaatcacgtttatgtgtataggatgaaaatgaaggagatt |
107 |
Q |
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| T |
5800364 |
tgagatgaaccattcaagaatattcttccaggaactctatgcaaccccatttccacgcccgaatcacgtttatgtgtataggatgaaaatgaaggagatt |
5800463 |
T |
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| Q |
108 |
cataataataatttgtatcagtagaaggagctaaagaagctcctgagatgcacaatcccatcgatcccgacacgacaatgaacacaacaataacacacac |
207 |
Q |
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| T |
5800464 |
cataataataatttgtatcagtagaaggagctaaagaagctcctgagatgcacaatcccatcgatcccgacacgacaatgaacacaacaataacacacac |
5800563 |
T |
|
| Q |
208 |
aactcaattcaaatcaatgacattttttcatatggataatga-nnnnnnnaaagattttcatacggataatgataaggtataatattttccagaaatagt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5800564 |
aactcaattcaaatcaatgacattttttcatatggataatgattttttttaaagattttcatacggataatgataaggtataatattttccagaaatagt |
5800663 |
T |
|
| Q |
307 |
aacaacaataaccgtctatcaaaaatagcnnnnnnnttcaactgaatatatgatatggatatatttttaatttgataagaagttaagcatatatgattgc |
406 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5800664 |
aacaacaataaccgtctatcaaaaatagcaaaaaaattcaactgaatatatgatatggatatatttttaatttgataagaagttaagcatatgtgattgc |
5800763 |
T |
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| Q |
407 |
acaagtggcacttcacatacactacatcac |
436 |
Q |
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| T |
5800764 |
acaagtggcacttcacatacactacatcac |
5800793 |
T |
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