View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_high_17 (Length: 445)
Name: NF5907_high_17
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Original strand, 39132187 - 39132614
Alignment:
| Q |
18 |
tgaagatggtagactcatttgtgcatattataacttggcctacaagaataaactattctctctcttgcgataacacgcgcataatgcaaaactgaactct |
117 |
Q |
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| T |
39132187 |
tgaagatggtagactaatttgtgcatattataacttggcctacaagaataaactattcgctctcttgcgataacacgcacataatgcaaaactgaactct |
39132286 |
T |
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| Q |
118 |
gagagcagttccatgaaaacaaactcatttgaaatcaagactcttgtttgtttttcttatttaaattatagtttatgaaacattccatactcttacacct |
217 |
Q |
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| T |
39132287 |
gagagcagttccatgaaaacaaactcatttgaaatcaagactcttgtttgtttttcttatttaaattatagtttatgaaacattccatactcatacacct |
39132386 |
T |
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| Q |
218 |
gcatgttagttgtaaataagttgattgtgaacttaggataaggcc-agtctatattctggccagagacagaaaatttcagtctgagacatggtctgcatt |
316 |
Q |
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| T |
39132387 |
gcatgttagttgtaaataagttgattgtgaacttaggataaggccaagtctatattctggccagagacagaaaatttcagtctgagacatggtctgcatt |
39132486 |
T |
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| Q |
317 |
tcagaatacaatctaatgtctgtggatctacttaaccgtgtaaaggtaaatagtattgatattggacctacaccatcatccaatgttcaaatgaattaga |
416 |
Q |
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| T |
39132487 |
tcagaatacaatctaatgtctgtggatctacttaaccgtgtaaaggtaactagtattgatattggacctacaccatcatccaatgttcaaataaattaga |
39132586 |
T |
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| Q |
417 |
attaacatgattctctctgctcctcctc |
444 |
Q |
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| T |
39132587 |
attaacaggattctctctattcctcctc |
39132614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 180
Target Start/End: Original strand, 39372284 - 39372416
Alignment:
| Q |
46 |
tataacttggcctacaagaataaactattctctctcttgcgataacacgcgcataatgcaaaactgaactctgagagcagttccatgaaaacaaactcat |
145 |
Q |
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| T |
39372284 |
tataacttggccaacaagaataaactagttgatctcttgcaagaacacgtccagaatgccaaactgatttgtgagggcagttgcaagaaaaccaactcca |
39372383 |
T |
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| Q |
146 |
ttgaaatcaagactcttgtttgtttttcttattta |
180 |
Q |
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| T |
39372384 |
ttgaaatcaaggtact--tttgtttttcttattta |
39372416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 74
Target Start/End: Original strand, 39126317 - 39126359
Alignment:
| Q |
32 |
tcatttgtgcatattataacttggcctacaagaataaactatt |
74 |
Q |
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| T |
39126317 |
tcatttgtgcatataataacttgacctacaagaatcaactatt |
39126359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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