View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5907_high_26 (Length: 350)
Name: NF5907_high_26
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5907_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 14472520 - 14472850
Alignment:
| Q |
1 |
ctttgccaaatccaaaaattccatgaaccaaaacaataggaggaagatcattatcaaattttgaatctttttcatcaattttcaaattctcttgaaccac |
100 |
Q |
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| T |
14472520 |
ctttgccaaatccaaaaattccatgaaccaaaacaataggaggaagatcattatcaaattttgaatctttttcatcaattttcaaattctcttgaaccac |
14472619 |
T |
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| Q |
101 |
aacatcattcttcatcttatccttttgaaaatattcattaacaacaattgatagatctccagcaacagctgaactaaatatgtaaaacccataaagcaaa |
200 |
Q |
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| T |
14472620 |
aacatcattcttcatcttatccttttgaaaatattcattaacaacaattgatagatctccagcaacagctgaactaaatatgtaaaacccataaagcaaa |
14472719 |
T |
|
| Q |
201 |
tgaaccaatgaactcacaaatagctccaacaattgcaaataactaaaccaaattctcaaca-ttttttgcaaattcaacaatgacccagaagcaaaaatc |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14472720 |
tgaaccaatgaactcacaaatagctccaacaattgcaaataactaaaccaaattctcaacatttttttgcaaattcaacaatgacccagaagcaaaaatc |
14472819 |
T |
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| Q |
300 |
aaaactttgtttgaattcacaagagccttct |
330 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
14472820 |
aaaactttgtttgaattcacaagagccttct |
14472850 |
T |
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