View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5907_high_29 (Length: 344)

Name: NF5907_high_29
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5907_high_29
NF5907_high_29
[»] chr7 (11 HSPs)
chr7 (1-324)||(46492594-46492917)
chr7 (3-250)||(46475769-46476016)
chr7 (1-229)||(46481428-46481656)
chr7 (1-152)||(46513665-46513812)
chr7 (164-251)||(46510014-46510101)
chr7 (111-229)||(46324285-46324403)
chr7 (111-226)||(46519247-46519362)
chr7 (111-229)||(46328717-46328835)
chr7 (111-229)||(46522586-46522704)
chr7 (111-229)||(46530019-46530137)
chr7 (111-211)||(46525685-46525785)
[»] chr4 (1 HSPs)
chr4 (104-229)||(89068-89193)


Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 46492917 - 46492594
Alignment:
Q  1 cggcagcatggactggagcacaaattaaagtgccagtaaagttcataactggtgattctgatttagtttacacttcttccggtgccaagcaatacatcga 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  46492917 cggcagcatggactggagcacaaattaaagtgccattaaagttcataactggtgattctgatttagtttacacttcttctggtaccaagcaatacatcga 46492818  T
Q  101 aagtggtggcttcaagaaagatgtgccaaatttggaggaagttgttatacaggaaggtgtggctcacttcaacaaccaagaagctgctgaggatattagc 200  Q
     |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46492817 gagtggtggcttcaagaaagatgtgcccaatttggaggaagttgttatacaggaaggtgtggctcacttcaacaaccaagaagctgctgaggatattagc 46492718  T
Q  201 aataacatttatgattttatcaagaagttttgaacgtatcaactcaattctaaagaactttttcattgggagttttctctaaatcctctgctaattaata 300  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  46492717 aatcacatttatgattttatcaagaagttttgaacgtatcaactcaattctaaagaacttgttcattaggagttttctctaaatcctctgctaattaata 46492618  T
Q  301 atatagttgcaatctatggtattt 324  Q
    |||||||||||||||||| |||||    
T  46492617 atatagttgcaatctatgctattt 46492594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 3 - 250
Target Start/End: Complemental strand, 46476016 - 46475769
Alignment:
Q  3 gcagcatggactggagcacaaattaaagtgccagtaaagttcataactggtgattctgatttagtttacacttcttccggtgccaagcaatacatcgaaa 102  Q
    ||||||||||| | |||| ||||||| |||||||| |||||||| || |||||||  |||  ||||||||||||||  ||| |||||||||||||||| |    
T  46476016 gcagcatggacggcagcaaaaattaaggtgccagtgaagttcatcacaggtgatttggatgcagtttacacttcttttggtaccaagcaatacatcgaga 46475917  T
Q  103 gtggtggcttcaagaaagatgtgccaaatttggaggaagttgttatacaggaaggtgtggctcacttcaacaaccaagaagctgctgaggatattagcaa 202  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||    
T  46475916 gtggtggtttcaagaaagatgtgccaaatttggaggaagttgttatacaggaaggtgtggctcactttaacaaccaagaagctgctgaagatatcagcaa 46475817  T
Q  203 taacatttatgattttatcaagaagttttgaacgtatcaactcaattc 250  Q
    | |||||||||||||||||||||| || ||| ||||||||||||||||    
T  46475816 tcacatttatgattttatcaagaaattctgatcgtatcaactcaattc 46475769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 46481656 - 46481428
Alignment:
Q  1 cggcagcatggactggagcacaaattaaagtgccagtaaagttcataactggtgattctgatttagtttacacttcttccggtgccaagcaatacatcga 100  Q
    ||||||||||||||||| |||| |||||||| ||||| |||||||| |  ||||||   |||||||||||||||||||  ||| ||||||||||||||||    
T  46481656 cggcagcatggactggatcacatattaaagtaccagtgaagttcatcataggtgatctggatttagtttacacttcttttggtaccaagcaatacatcga 46481557  T
Q  101 aagtggtggcttcaagaaagatgtgccaaatttggaggaagttgttatacaggaaggtgtggctcacttcaacaaccaagaagctgctgaggatattagc 200  Q
     || ||||| |||||||| ||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||| || ||     
T  46481556 gagcggtggtttcaagaacgatgtgccaaatttggaggaagtggttatacaaaaaggtgtggctcacttcaacaaccaagaagctgctgaggaaatcagt 46481457  T
Q  201 aataacatttatgattttatcaagaagtt 229  Q
    ||| |||||||||||||||||||||||||    
T  46481456 aatcacatttatgattttatcaagaagtt 46481428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 46513812 - 46513665
Alignment:
Q  1 cggcagcatggactggagcacaaattaaagtgccagtaaagttcataactggtgattctgatttagtttacacttcttccggtgccaagcaatacatcga 100  Q
    ||||||||||||| |||||  |  ||||||| ||||| ||||||||||| || ||||  ||| ||||||||  |||||  ||||| ||||||||||| ||    
T  46513812 cggcagcatggaccggagccaaggttaaagttccagtgaagttcataacaggcgatttggatatagtttacgtttcttttggtgcgaagcaatacattga 46513713  T
Q  101 aagtggtggcttcaagaaagatgtgccaaatttggaggaagttgttatacag 152  Q
    ||||||||| |||    ||||||||||||||||||||||||| |||||||||    
T  46513712 aagtggtggtttc----aagatgtgccaaatttggaggaagtggttatacag 46513665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 46510101 - 46510014
Alignment:
Q  164 tcacttcaacaaccaagaagctgctgaggatattagcaataacatttatgattttatcaagaagttttgaacgtatcaactcaattct 251  Q
    ||||| ||||||||||||||||||||||||  | || ||| |||||||||||||||||||||||| |||| | |||||||||||||||    
T  46510101 tcactacaacaaccaagaagctgctgaggaagtcagtaatcacatttatgattttatcaagaagtattgatcttatcaactcaattct 46510014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 229
Target Start/End: Original strand, 46324285 - 46324403
Alignment:
Q  111 ttcaagaaagatgtgccaaatttggaggaagttgttatacaggaaggtgtggctcacttcaacaaccaagaagctgctgaggatattagcaataacattt 210  Q
    |||||| |||||||||| |||||||| |||||  || | ||  |||| ||||||||||||||||| |||||||| || ||||| || || ||| ||||||    
T  46324285 ttcaaggaagatgtgccgaatttggaagaagtgattgtccaaaaaggagtggctcacttcaacaatcaagaagcagcagaggaaatcagtaatcacattt 46324384  T
Q  211 atgattttatcaagaagtt 229  Q
    |||| || |||||||||||    
T  46324385 atgaattcatcaagaagtt 46324403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 226
Target Start/End: Complemental strand, 46519362 - 46519247
Alignment:
Q  111 ttcaagaaagatgtgccaaatttggaggaagttgttatacaggaaggtgtggctcacttcaacaaccaagaagctgctgaggatattagcaataacattt 210  Q
    |||||| |||||||||| ||||||||||||||  || | ||  |||| || ||||| |||||||| ||||||||||| ||||| ||||| ||| ||||||    
T  46519362 ttcaaggaagatgtgccgaatttggaggaagtgattgtgcaaaaaggagtagctcatttcaacaatcaagaagctgcagaggaaattagtaatcacattt 46519263  T
Q  211 atgattttatcaagaa 226  Q
    | || || ||||||||    
T  46519262 acgaattcatcaagaa 46519247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 229
Target Start/End: Original strand, 46328717 - 46328835
Alignment:
Q  111 ttcaagaaagatgtgccaaatttggaggaagttgttatacaggaaggtgtggctcacttcaacaaccaagaagctgctgaggatattagcaataacattt 210  Q
    |||||| |||||||||| |||||||| |||||  |||| ||  |||| || |||||||||||||| ||||||||||  ||||| || || ||| ||||||    
T  46328717 ttcaaggaagatgtgccgaatttggaagaagtgattattcaaaaaggagttgctcacttcaacaatcaagaagctgaagaggaaatcagtaattacattt 46328816  T
Q  211 atgattttatcaagaagtt 229  Q
    | || || |||| ||||||    
T  46328817 acgaattcatcatgaagtt 46328835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 229
Target Start/End: Complemental strand, 46522704 - 46522586
Alignment:
Q  111 ttcaagaaagatgtgccaaatttggaggaagttgttatacaggaaggtgtggctcacttcaacaaccaagaagctgctgaggatattagcaataacattt 210  Q
    |||||| ||||||| || ||| |||| |||||  |||| ||  |||| ||||| ||||||||||| |||||||| || ||||| || || ||| ||||||    
T  46522704 ttcaaggaagatgttcccaatctggaagaagtgattatccaaaaaggagtggcgcacttcaacaatcaagaagcagcagaggaaataagtaatcacattt 46522605  T
Q  211 atgattttatcaagaagtt 229  Q
    |||| || |||||||||||    
T  46522604 atgaattcatcaagaagtt 46522586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 229
Target Start/End: Complemental strand, 46530137 - 46530019
Alignment:
Q  111 ttcaagaaagatgtgccaaatttggaggaagttgttatacaggaaggtgtggctcacttcaacaaccaagaagctgctgaggatattagcaataacattt 210  Q
    |||||| ||||||| || ||| |||| |||||  |||| ||  |||| ||||| ||||||||||| |||||||| || ||||| || || ||| ||||||    
T  46530137 ttcaaggaagatgttcccaatctggaagaagtgattatccaaaaaggagtggcgcacttcaacaatcaagaagcagcagaggaaataagtaatcacattt 46530038  T
Q  211 atgattttatcaagaagtt 229  Q
    |||| || |||||||||||    
T  46530037 atgaattcatcaagaagtt 46530019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 46525785 - 46525685
Alignment:
Q  111 ttcaagaaagatgtgccaaatttggaggaagttgttatacaggaaggtgtggctcacttcaacaaccaagaagctgctgaggatattagcaataacattt 210  Q
    |||||| |||||||||  ||||||||||||||  || | ||  |||| || |||||||||||||| ||||||||||  ||||| || || ||| ||||||    
T  46525785 ttcaaggaagatgtgctgaatttggaggaagtgattgttcaaaaaggagttgctcacttcaacaatcaagaagctgaagaggaaatcagtaattacattt 46525686  T
Q  211 a 211  Q
    |    
T  46525685 a 46525685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 104 - 229
Target Start/End: Original strand, 89068 - 89193
Alignment:
Q  104 tggtggcttcaagaaagatgtgccaaatttggaggaagttgttatacaggaaggtgtggctcacttcaacaaccaagaagctgctgaggatattagcaat 203  Q
    |||||| |||||||||||||| |||  |||||||||||| ||| | ||||||||  | || |||||||||||||||||||| ||  | || || ||||||    
T  89068 tggtggtttcaagaaagatgttccaggtttggaggaagtggttgtgcaggaagggatagcacacttcaacaaccaagaagcagcacaagacatcagcaat 89167  T
Q  204 aacatttatgattttatcaagaagtt 229  Q
     |||||||||| |||||  |||||||    
T  89168 cacatttatgactttattcagaagtt 89193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University