View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5907_high_34 (Length: 331)

Name: NF5907_high_34
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5907_high_34
NF5907_high_34
[»] chr2 (3 HSPs)
chr2 (21-103)||(27896757-27896839)
chr2 (232-310)||(27897729-27897807)
chr2 (181-236)||(27897447-27897502)


Alignment Details
Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 27896757 - 27896839
Alignment:
Q  21 aatggttcaacaaaaatatacgcgttaaattgattacctgaacaaaagattgaattgaaagttatcgtgcaactataactcat 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27896757 aatggttcaacaaaaatatacgcgttaaattgattacctgaacaaaagattgaattgaaagttatcgtgcaactataactcat 27896839  T

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Target: chr2; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 27897729 - 27897807
Alignment:
Q  232 actatgtaattttagaccattatgttggactcaagcctagcttatactactataacccctttattaatatggttttctt 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27897729 actatgtaattttagaccattatgttggactcaagcctagcttatactactataacccctttattaatatggttttctt 27897807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 27897447 - 27897502
Alignment:
Q  181 ggacattacatgtgaatattgtttttatatgttttaatcaatttttgattcactat 236  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  27897447 ggacattacatgtgaatattgtttttatatgtctgaatcaatttttgattcactat 27897502  T

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