View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5907_high_35 (Length: 331)

Name: NF5907_high_35
Description: NF5907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5907_high_35
NF5907_high_35
[»] chr3 (2 HSPs)
chr3 (19-325)||(27784882-27785188)
chr3 (19-323)||(27780992-27781286)
[»] chr6 (8 HSPs)
chr6 (43-267)||(2162393-2162617)
chr6 (43-102)||(2168721-2168780)
chr6 (43-102)||(2180354-2180413)
chr6 (158-321)||(2207371-2207534)
chr6 (151-320)||(2168503-2168672)
chr6 (151-320)||(2180136-2180305)
chr6 (43-87)||(2207593-2207637)
chr6 (31-96)||(2153484-2153549)
[»] scaffold0286 (2 HSPs)
scaffold0286 (43-119)||(14487-14563)
scaffold0286 (199-267)||(14644-14712)
[»] scaffold0254 (1 HSPs)
scaffold0254 (151-320)||(2025-2194)
[»] chr1 (1 HSPs)
chr1 (242-322)||(7500070-7500150)


Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 27784882 - 27785188
Alignment:
Q  19 cttcaactctccgcataaaagaagagcctcttcaacatgcgcccaaaagcaagaatctatagtcaaaatagcttccacattctttctaggtgtactgttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27784882 cttcaactctccgcataaaagaagagcctcttcaacatgcgcccaaaagcaagaatctatagtcaaaatagcttccacattctttctaggtgtactgttt 27784981  T
Q  119 acatcacttgtgcgattttgtgaatcttcaaataaccactcctccaactgtttgaaatgttcggaccttttgtaattaatatagtctttaccaccttcac 218  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27784982 acatcacttgtgcgattttgagaatcttcaaataaccactcctccaactgtttgaaatgttcggaccttttgttattaatatagtctttaccaccttcac 27785081  T
Q  219 tatagtatttagcaatggatagtggttcaaccattctcctataagtagtccctgcgtataaccaacgggtacgaaaagatgcaccttctttttgaggctt 318  Q
    | |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27785082 tgtagtatttggcaatggatagtggttcaaccattctcctgtaagtagtccctgcgtataaccaacgggtacgaaaagctgcaccttctttttgaggctt 27785181  T
Q  319 catctca 325  Q
    |||||||    
T  27785182 catctca 27785188  T

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Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 27780992 - 27781286
Alignment:
Q  19 cttcaactctccgcataaaagaagagcctcttcaacatgcgcccaaaagcaagaatctatagtcaaaatagcttccacattctttctaggtgtactgttt 118  Q
    ||||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||||   |||||||| ||| |||||||||||||| ||||| |||||    
T  27780992 cttcaactctctgcataaaaggagagcctcttcaacatgtgcccaaaagcacgaatctgaggtcaaaatggctgccacattctttctatgtgtattgttt 27781091  T
Q  119 acatcacttgtgcgattttgtgaatcttcaaataaccactcctccaactgtttgaaatgttcggaccttttgtaattaatatagtctttaccaccttcac 218  Q
      ||||| |||  ||||||         | |  ||||| ||||||||||||||||| ||||  |||||||||| || |  ||||||| |||| ||||  |    
T  27781092 gtatcacatgttggattttc--------ccatcaaccattcctccaactgtttgaagtgtttagaccttttgttatgac-atagtctataccgccttttc 27781182  T
Q  219 tatagtatttagcaatggatagtggttcaaccattctcctataagtagtccctgcgtataaccaacgggtacgaaaagatgcaccttctttttgaggctt 318  Q
    ||||||||| |||||| | ||| ||||||||||||||||| || ||||||||  | |||||||||||||||||||||| |||||||||||||||||| ||    
T  27781183 tatagtattcagcaatagctagaggttcaaccattctcctgta-gtagtcccgccatataaccaacgggtacgaaaagctgcaccttctttttgaggttt 27781281  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 267
Target Start/End: Complemental strand, 2162617 - 2162393
Alignment:
Q  43 agcctcttcaacatgcgcccaaaagcaagaatctatagtcaaaatagcttccacattctttctaggtgtactgtttacatcacttgtgcgattttgt-ga 141  Q
    ||||||||||||||| |||||||||||||||||||||||||||||  ||||||| |||||  ||  |||||||||||  ||| || |  | |||||| ||    
T  2162617 agcctcttcaacatgtgcccaaaagcaagaatctatagtcaaaatcacttccactttcttcttacttgtactgtttaattca-tttttagtttttgtcga 2162519  T
Q  142 atcttcaaataaccactcctccaactgtttgaaatgttcggaccttttgtaattaatatagtctttaccaccttcactatagtatttagcaatggatagt 241  Q
     |||||   |||||| ||||||||   |||||| |||| ||| || |  | ||| | ||| ||||||||||| || |||||||| | |||||| | ||||    
T  2162518 gtcttcctctaaccattcctccaaagttttgaagtgtttggatctatgtttattgacataatctttaccaccatctctatagtactgagcaatagctagt 2162419  T
Q  242 ggttcaaccattctcctataagtagt 267  Q
    |||||||||||||| ||||| |||||    
T  2162418 ggttcaaccattcttctatatgtagt 2162393  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 2168780 - 2168721
Alignment:
Q  43 agcctcttcaacatgcgcccaaaagcaagaatctatagtcaaaatagcttccacattctt 102  Q
    ||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||    
T  2168780 agcctcttcaacatgtgcccaaaagcaagaatctatagtcaaaatcacttccacattctt 2168721  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 2180413 - 2180354
Alignment:
Q  43 agcctcttcaacatgcgcccaaaagcaagaatctatagtcaaaatagcttccacattctt 102  Q
    ||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||    
T  2180413 agcctcttcaacatgtgcccaaaagcaagaatctatagtcaaaatcacttccacattctt 2180354  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 158 - 321
Target Start/End: Complemental strand, 2207534 - 2207371
Alignment:
Q  158 tcctccaactgtttgaaatgttcggaccttttgtaattaatatagtctttaccaccttcactatagtatttagcaatggatagtggttcaaccattctcc 257  Q
    |||||||| | |||||| |||| ||||||||| | ||| | ||| ||||||||||||||  | ||||||| |||||| | || ||||||||||||||| |    
T  2207534 tcctccaattttttgaagtgtttggacctttttttattcacataatctttaccaccttctttgtagtattgagcaatagctaatggttcaaccattcttc 2207435  T
Q  258 tataagtagtccctgcgtataaccaacgggtacgaaaagatgcaccttctttttgaggcttcat 321  Q
    ||||| || | ||  | |||| |||||  ||| ||||| | ||||||||||||| |||||||||    
T  2207434 tataaataattccaccatatagccaacaagtaggaaaaaaggcaccttcttttttaggcttcat 2207371  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 151 - 320
Target Start/End: Complemental strand, 2168672 - 2168503
Alignment:
Q  151 taaccactcctccaactgtttgaaatgttcggaccttttgtaattaatatagtctttaccaccttcactatagtatttagcaatggatagtggttcaacc 250  Q
    |||||| ||||||||   |||||| |||| ||| ||||  | ||| ||||| ||||||||||| || |||||||||| |||||| | |||||||||||||    
T  2168672 taaccattcctccaaagctttgaagtgtttggatctttgtttattgatataatctttaccaccgtctctatagtattgagcaatagctagtggttcaacc 2168573  T
Q  251 attctcctataagtagtccctgcgtataaccaacgggtacgaaaagatgcaccttctttttgaggcttca 320  Q
    ||||| ||||| ||||| ||  || | | ||| || |||||||| |  || |||||| ||||||||||||    
T  2168572 attcttctatatgtagttccaccgaagatccagcgagtacgaaatgcagcgccttctctttgaggcttca 2168503  T

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Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 151 - 320
Target Start/End: Complemental strand, 2180305 - 2180136
Alignment:
Q  151 taaccactcctccaactgtttgaaatgttcggaccttttgtaattaatatagtctttaccaccttcactatagtatttagcaatggatagtggttcaacc 250  Q
    |||||| ||||||||   |||||| |||| ||| ||||  | ||| ||||| ||||||||||| || |||||||||| |||||| | |||||||||||||    
T  2180305 taaccattcctccaaagctttgaagtgtttggatctttgtttattgatataatctttaccaccgtctctatagtattgagcaatagctagtggttcaacc 2180206  T
Q  251 attctcctataagtagtccctgcgtataaccaacgggtacgaaaagatgcaccttctttttgaggcttca 320  Q
    ||||| ||||| ||||| ||  || | | ||| || |||||||| |  || |||||| ||||||||||||    
T  2180205 attcttctatatgtagttccaccgaagatccagcgagtacgaaatgcagcgccttctctttgaggcttca 2180136  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 2207637 - 2207593
Alignment:
Q  43 agcctcttcaacatgcgcccaaaagcaagaatctatagtcaaaat 87  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||    
T  2207637 agcctcttcaacatgtgcccaaaagcaagaatctctagtcaaaat 2207593  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 2153549 - 2153484
Alignment:
Q  31 gcataaaagaagagcctcttcaacatgcgcccaaaagcaagaatctatagtcaaaatagcttccac 96  Q
    |||| ||| |||||||||||||||||  ||||||||||||||||||| ||| ||||| | ||||||    
T  2153549 gcatgaaataagagcctcttcaacatatgcccaaaagcaagaatctagagttaaaattgattccac 2153484  T

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Target: scaffold0286 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 14487 - 14563
Alignment:
Q  43 agcctcttcaacatgcgcccaaaagcaagaatctatagtcaaaatagcttccacattctttctaggtgtactgttta 119  Q
    ||||||||||||||| |||||||||||||||||||||||||||||  ||||||| |||||  ||  |||||||||||    
T  14487 agcctcttcaacatgtgcccaaaagcaagaatctatagtcaaaatcacttccactttcttcttacttgtactgttta 14563  T

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Target: scaffold0286; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 14644 - 14712
Alignment:
Q  199 atagtctttaccaccttcactatagtatttagcaatggatagtggttcaaccattctcctataagtagt 267  Q
    ||| ||||||||||| || |||||||| | |||||| | |||||||||||||||||| ||||| |||||    
T  14644 ataatctttaccaccatctctatagtactgagcaatagctagtggttcaaccattcttctatatgtagt 14712  T

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Target: scaffold0254 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 151 - 320
Target Start/End: Original strand, 2025 - 2194
Alignment:
Q  151 taaccactcctccaactgtttgaaatgttcggaccttttgtaattaatatagtctttaccaccttcactatagtatttagcaatggatagtggttcaacc 250  Q
    |||||| ||||||||   |||||| |||| ||| ||||  | ||| ||||| ||||||||||| || |||||||||| |||||| | |||||||||||||    
T  2025 taaccattcctccaaagctttgaagtgtttggatctttgtttattgatataatctttaccaccgtctctatagtattgagcaatagctagtggttcaacc 2124  T
Q  251 attctcctataagtagtccctgcgtataaccaacgggtacgaaaagatgcaccttctttttgaggcttca 320  Q
    ||||| ||||| ||||| ||  || | | ||| || |||||||| |  || |||||| ||||||||||||    
T  2125 attcttctatatgtagttccaccgaagagccagcgagtacgaaatgcagcgccttctctttgaggcttca 2194  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 322
Target Start/End: Complemental strand, 7500150 - 7500070
Alignment:
Q  242 ggttcaaccattctcctataagtagtccctgcgtataaccaacgggtacgaaaagatgcaccttctttttgaggcttcatc 322  Q
    |||||||||||||||||||||||||| |   |||| | |||||| |||||||  | ||| ||||||||  |||||||||||    
T  7500150 ggttcaaccattctcctataagtagttctgtcgtagagccaacgagtacgaagcggtgcgccttctttccgaggcttcatc 7500070  T

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